Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,419,401 – 4,419,499 |
Length | 98 |
Max. P | 0.991439 |
Location | 4,419,401 – 4,419,499 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 92.19 |
Mean single sequence MFE | -26.68 |
Consensus MFE | -22.56 |
Energy contribution | -22.96 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -2.16 |
Structure conservation index | 0.85 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4419401 98 + 27905053 CAAUGGCGCAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUACAUUAAUUGCAUCGGUUACGUAAGUAACAUGUGGCAUACAAUGUGGCAUUGAAAU (((((.(((((((....)))........(((.((((((((((......)))))))..(((((....)))))....))).)))..)))).))))).... ( -32.10) >DroSec_CAF1 20294 97 + 1 CAAUGGCGCAAGUAGCAACUGGAUAUGAGUAAACCGUGCAGUACAUUAAUUGCAUCGGUUACGUAAGUUACAUGUGGCACACAA-AUGGCAUUGAAAU (((((.((...(((((.(((.......))).(((((((((((......)))))).)))))......))))).((((...)))).-.)).))))).... ( -25.60) >DroSim_CAF1 22002 97 + 1 CAAUGGCGCAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUACAUUAAUUGCAUCGGUUACGUAAGUAACAUGUGGCACACAA-AUGGCAUUGAAAC (((((.(((.....))............((..((((((((((......)))))))..(((((....)))))....)))..))..-..).))))).... ( -26.60) >DroEre_CAF1 20260 96 + 1 CAAUGGCACAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUGUAUUAAUUGCAUCAGUAACGUAAGUUACAUGUGGCACACAA--UGGCUUUGAAUU (((.(((.(((((....)))........((..((((((((((......)))))))..(((((....)))))....)))..))..--)))))))).... ( -23.60) >DroYak_CAF1 20697 96 + 1 CAAUGACACAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUACAUUAAUUGCAUCGGUUAGGUAAGUUACGUGUGGCAUACAA--UGGCAUUGAAAC (((((.((((.(((((.(((.......))).(((((((((((......)))))).)))))......))))).)))).(((...)--)).))))).... ( -25.50) >consensus CAAUGGCGCAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUACAUUAAUUGCAUCGGUUACGUAAGUUACAUGUGGCACACAA__UGGCAUUGAAAU ...((.((((.(((((.(((.......))).(((((((((((......)))))).)))))......))))).)))).))................... (-22.56 = -22.96 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:11 2006