Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,418,885 – 4,418,985 |
Length | 100 |
Max. P | 0.890020 |
Location | 4,418,885 – 4,418,985 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 89.70 |
Mean single sequence MFE | -27.44 |
Consensus MFE | -21.02 |
Energy contribution | -22.62 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.77 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4418885 100 - 27905053 GGUUGGCACAAAAAGGACGGCAGCAGGAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUUUCGAAAAUCGAAGAAAUACCGU (((((((......(((((.(((....(((((....))....))).......))).))))).......))))....((((((.....))))))...))).. ( -28.52) >DroSec_CAF1 19806 90 - 1 GGGUG----------GACGGCAGCAGAAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUUUCGAAAAUCGAAGAACUACCGU .((((----------(..(((........((....))((.(((((......)).))).)).......))).....((((((.....)))))).))))).. ( -24.20) >DroSim_CAF1 21504 100 - 1 GGGUGGCACAAAAAGGACGCCAGCAGAAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUUUCGAAAAUCGAAGAAAUACCGU (((((((......((((((((.......)))....(((.............))).))))).......))))))).((((((.....))))))........ ( -27.84) >DroEre_CAF1 19752 100 - 1 GGGUGGCACAAAAAGGACUGCUACAGCAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUCUCGAAAAUCGAAGAAAUAACGU (((((((......((((((((....((..((....)).))....(......))))))))).......))))))).((((((.....)).))))....... ( -30.42) >DroYak_CAF1 20180 100 - 1 GGGUGGCACAAAAAGGACUGCCACAGGAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUUAAAUCAGCAAUUCGUUCUCGAAAAUCGAAGAAAAAACGU ((((.((.....(((((((((.....(((((....))....)))........)))))))))......)).)))).((((((.....)).))))....... ( -26.22) >consensus GGGUGGCACAAAAAGGACGGCAGCAGAAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUUUCGAAAAUCGAAGAAAUACCGU (((((((......(((((...........((....)).(((..........))).))))).......))))))).((((((.....))))))........ (-21.02 = -22.62 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006