Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,415,258 – 4,415,349 |
Length | 91 |
Max. P | 0.545188 |
Location | 4,415,258 – 4,415,349 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 82.66 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -17.91 |
Energy contribution | -18.17 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.21 |
Mean z-score | -2.22 |
Structure conservation index | 0.59 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4415258 91 - 27905053 CCACUGUUGUUGGCCAAGUUGUAGUUGGUGUUGCUGUUGCUGUUACCCCUGUCACUGCAGCCGGCUAAUGACAGCCAAACGGCCACUUCAA ....(((..((((((..((((((((.((((..((....))...))))......)))))))).))))))..)))(((....)))........ ( -31.50) >DroSec_CAF1 16279 85 - 1 CCGCUGUUGUUGGCCAAGUUGUAGU------UGCUGUUGCUGUUACCUCUGUCACUGCAGCCGGCUAAUGACAGCCAAACGGCCACUUCAA ..(((((..((((((..((((((((------.((.(..(......)..).)).)))))))).))))))..)))))................ ( -30.70) >DroSim_CAF1 17975 85 - 1 CCGCUGUUGUUGGCCAAGUUGUAGU------UGCUGUUGCUGUUACCUCUGUCACUGCAGCCGGCUAAUGACAGCCAAACGGCCACUUCAA ..(((((..((((((..((((((((------.((.(..(......)..).)).)))))))).))))))..)))))................ ( -30.70) >DroEre_CAF1 16044 88 - 1 CCGCUG---UUGGCCAAUUUGUAGUUGCUGUUGCGGCUGCUGUUAGCUCUGUCACUGCAGCCAGCUAAUGACGGCCAAACGGCCACUUGAA ..((((---((((((.....((((((((....)))))))).(((((((((((....))))..)))))))...)))).))))))........ ( -37.20) >DroYak_CAF1 16494 88 - 1 CCGCUG---UUGGCCAAGUUGUAGUUGCUGUUGCUGCUGCUGUUAACUCUGUCACUGCAGCCAGCUAAUGACAGCCAAACGGCCACUUGAA ......---.(((((.....(((((.((....)).))))).(((....((((((..((.....))...))))))...))))))))...... ( -27.00) >DroPer_CAF1 24692 79 - 1 ---------UUGUCCGAGCCGUUGUCGA---AGGUGUUGUUGGUCCCUCUGUUACUGCAGCCGGCUAAUGACAGCCAAACGGCCACUUCAG ---------......(.((((((.....---.(((((..((((((...((((....))))..))))))..))).)).)))))))....... ( -25.50) >consensus CCGCUG___UUGGCCAAGUUGUAGUUG____UGCUGUUGCUGUUACCUCUGUCACUGCAGCCGGCUAAUGACAGCCAAACGGCCACUUCAA ..........(((((.(((.(((((.......))))).)))(((....((((((..((.....))...))))))...))))))))...... (-17.91 = -18.17 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:08 2006