Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,410,006 – 4,410,114 |
Length | 108 |
Max. P | 0.888964 |
Location | 4,410,006 – 4,410,114 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.71 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -17.17 |
Energy contribution | -17.67 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.79 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4410006 108 + 27905053 UGCCCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAUCCACCACCC--A-CCCGCCAUACCACCCUUUCGAUGCCC--CACC .......((((((...((....)).((((((((((.......)))))))))).......))))))----............--.-..........................--.... ( -19.10) >DroSec_CAF1 11088 103 + 1 UGCCCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAUCCCCCACCC--A-CC----AUC-CCCCCUUUCGAUGCCC--CACC .......((((((...((....)).((((((((((.......)))))))))).......))))))----............--.-.(----(((-.........))))...--.... ( -19.90) >DroSim_CAF1 12782 101 + 1 UGCCCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAUCCCCCACCC--A-CC----AUC-C--CCUUUCGAUGCCC--CACC .......((((((...((....)).((((((((((.......)))))))))).......))))))----............--.-.(----(((-.--......))))...--.... ( -20.40) >DroEre_CAF1 10985 92 + 1 UGCUCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAC-----------CCCC----AUC----CCCCUCUAUGCCC--CACC .......((((((...((....)).((((((((((.......)))))))))).......))))))----...-----------....----...----.............--.... ( -19.10) >DroYak_CAF1 11299 101 + 1 UGCUCCUGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAUCCCCCCGCC--CCCC----ACC----CACUUCGCUGCCC--CACC .((....((((.((...........((((((((((.......))))))))))...........((----.........)).--....----...----.)).)))).))..--.... ( -21.30) >DroAna_CAF1 16441 108 + 1 UGUUU-GUCGCUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGCUUCACAUCCCACCCCUCGAGCU----AUC----UAGCUCACCGCCCAGCACC .....-...((((...((.......((((((((((.......))))))))))..............................(((((----...----.)))))...)).))))... ( -30.30) >consensus UGCCCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC____CAUCCCCCACCC__A_CC____AUC____CCUUUCGAUGCCC__CACC .........((((...(((......((((((((((.......))))))))))..........)))....))))............................................ (-17.17 = -17.67 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:07 2006