Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,392,696 – 4,392,816 |
Length | 120 |
Max. P | 0.733980 |
Location | 4,392,696 – 4,392,816 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.25 |
Mean single sequence MFE | -22.62 |
Consensus MFE | -14.20 |
Energy contribution | -14.57 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.63 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4392696 120 + 27905053 AAGCAAGUAUACUGAGGAGAAGUGGAAAAAAAUUGCAGCACUCCAAACAGAGUGUACAAAAGUCCAAUAAGGAACAAAUUAUUGCACCUUCGUACGAAAAUAACGAAGACUAUGACAGUG ..((((...((((.......))))........)))).((((((......))))))......(((((((((........))))))...((((((.........)))))).....))).... ( -22.90) >DroSec_CAF1 5051 120 + 1 AACCAAGUAUACUGAGGAGAGGUGGAAAAAAAUUGCAGCACUCCAAACAGAGUGUACAAAAGUCCAAUAAGAAACAAAUGGUUGCACCUUCGUACGAAAAUAACGAAGACUAUGACAGCG (((((.(((((((..((((.(.((.((.....)).)).).))))......))))))).....((......))......)))))....((((((.........))))))............ ( -22.90) >DroSim_CAF1 5037 120 + 1 AACCAAGUAUACUGAGGAGAGGUGGAAAAAAAAUGCAGCACUCCAAACAGAGUGUACAAAAGUCCAAUAAGAAACAUAUGGCUGCAUCUUCGUACGAAAAUAACGAAGACUAUGACAGCG ......(((((((..((((.(.((.(.......).)).).))))......))))))).......................(((((((((((((.........)))))))...)).)))). ( -26.30) >DroEre_CAF1 4927 114 + 1 AACCAAGCAUAAU------GAGUCGAAAAAAAUUGAAACACUCCAAAAAGAGUGCACAAAAGUUCAAUAAUGAAAAAAGUAUUGCAACUUCGGGCGAAAAUAACGAAGAUUAUGACAGCG ......(((((((------...(((..............((((......))))((.(..((((((((((.(......).))))).)))))..)))........)))..)))))).).... ( -18.40) >consensus AACCAAGUAUACUGAGGAGAAGUGGAAAAAAAUUGCAGCACUCCAAACAGAGUGUACAAAAGUCCAAUAAGAAACAAAUGAUUGCACCUUCGUACGAAAAUAACGAAGACUAUGACAGCG ......................((((......(((..((((((......)))))).)))...))))..............((((((.(((((...........)))))....)).)))). (-14.20 = -14.57 + 0.38)
Location | 4,392,696 – 4,392,816 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.25 |
Mean single sequence MFE | -24.55 |
Consensus MFE | -16.85 |
Energy contribution | -18.60 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.12 |
Mean z-score | -1.91 |
Structure conservation index | 0.69 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4392696 120 - 27905053 CACUGUCAUAGUCUUCGUUAUUUUCGUACGAAGGUGCAAUAAUUUGUUCCUUAUUGGACUUUUGUACACUCUGUUUGGAGUGCUGCAAUUUUUUUCCACUUCUCCUCAGUAUACUUGCUU .((((....(((.............((((((((((.((((((........)))))).))))))))))(((((....)))))................)))......)))).......... ( -26.30) >DroSec_CAF1 5051 120 - 1 CGCUGUCAUAGUCUUCGUUAUUUUCGUACGAAGGUGCAACCAUUUGUUUCUUAUUGGACUUUUGUACACUCUGUUUGGAGUGCUGCAAUUUUUUUCCACCUCUCCUCAGUAUACUUGGUU .((((......(((((((.........)))))))....................((((...(((((((((((....)))))).)))))......))))........)))).......... ( -23.80) >DroSim_CAF1 5037 120 - 1 CGCUGUCAUAGUCUUCGUUAUUUUCGUACGAAGAUGCAGCCAUAUGUUUCUUAUUGGACUUUUGUACACUCUGUUUGGAGUGCUGCAUUUUUUUUCCACCUCUCCUCAGUAUACUUGGUU .(((((....((((((((.........))))))))))))).((((.........((((....((((((((((....)))))).)))).......))))..........))))........ ( -28.11) >DroEre_CAF1 4927 114 - 1 CGCUGUCAUAAUCUUCGUUAUUUUCGCCCGAAGUUGCAAUACUUUUUUCAUUAUUGAACUUUUGUGCACUCUUUUUGGAGUGUUUCAAUUUUUUUCGACUC------AUUAUGCUUGGUU .((((.((((((..(((............((((((.(((((..........)))))))))))((.(((((((....)))))))..))........)))...------))))))..)))). ( -20.00) >consensus CGCUGUCAUAGUCUUCGUUAUUUUCGUACGAAGGUGCAACAAUUUGUUCCUUAUUGGACUUUUGUACACUCUGUUUGGAGUGCUGCAAUUUUUUUCCACCUCUCCUCAGUAUACUUGGUU .((((....................((((((((((.((((((........)))))).))))))))))(((((....))))).........................)))).......... (-16.85 = -18.60 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:06 2006