Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 796,508 – 796,625 |
Length | 117 |
Max. P | 0.561111 |
Location | 796,508 – 796,625 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.24 |
Mean single sequence MFE | -30.73 |
Consensus MFE | -18.98 |
Energy contribution | -18.85 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.27 |
Mean z-score | -1.52 |
Structure conservation index | 0.62 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 796508 117 + 27905053 GAUGGCGCAAAAUAGAUUGCGUGUAAUAGGUGGCGCGAUAU---ACAGUUAUCAGGGCUGCAUAGGUCUUGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGAAUUGAGUCUGGUUA .((.((((...((..((((....))))..)).)))).))..---.(((...((((((((.....)))))))).((((((((((..(((((...)))))..))))))))))...))).... ( -38.50) >DroSec_CAF1 20382 98 + 1 -------------------CGUGAAAAAGAUGGCGUGAUAU---ACAUUUAUCAUGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGUAUUGAGUCUGGUUA -------------------............(.(((((((.---.....))))))).).........(..((.((((.(((((..(((((...)))))..))))).))))..))..)... ( -25.70) >DroSim_CAF1 21297 115 + 1 --UGGCGUGAAAAAGAUGGCGUGUAAUAGGUGGCGUGAUAC---ACAUUUAUCAUGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGUAUUGAGUCUGGUUA --..((((.(......).)))).......(..((((((((.---.....)))))).))..)......(..((.((((.(((((..(((((...)))))..))))).))))..))..)... ( -30.50) >DroEre_CAF1 19453 102 + 1 GAUAA--------------CGUGAAAUAGAUGGCGUAAAAUAUUACAUAUAUCAGGGCUCCGUAAGUC---AGUGAUU-CACGUUAUCUGCCAUAGAUGGCGUUGAGUUGGGCUGUGAUA ....(--------------(((.(......).)))).............(((((.((((((....)..---...((((-(((((((((((...))))))))).))))))))))).))))) ( -28.20) >consensus __UGG______________CGUGAAAUAGAUGGCGUGAUAU___ACAUUUAUCAGGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGAAUUGAGUCUGGUUA ...............................(((.....................((((.....)))).....((((((((((..(((((...)))))..)))))))))).)))...... (-18.98 = -18.85 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:05 2006