Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,391,599 – 4,391,719 |
Length | 120 |
Max. P | 0.956402 |
Location | 4,391,599 – 4,391,719 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.58 |
Mean single sequence MFE | -38.93 |
Consensus MFE | -33.90 |
Energy contribution | -34.30 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -1.74 |
Structure conservation index | 0.87 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4391599 120 - 27905053 UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUCCGGGUUAGCUCGCGGGCAAACUGCUCGCCAUUAAUGGGGGCACUUGGAGCCUUA ....((((......((((.....))))(((((....))))).(((((...(((((((((((((....))).))))).))))).....(((((.(((....)))))))).))))).)))). ( -37.60) >DroSec_CAF1 3955 120 - 1 UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUGCGGGUUAGCUCGUAGGCAAACUGCUCGCCAUUAAUGGGGGCACUUGGAGCCUUA ....((((......((((.....))))(((((....))))).(((((...((((((((((((..((((((....))))))))).))))))...(((....))))))...))))).)))). ( -38.30) >DroSim_CAF1 3941 120 - 1 UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAGAUCUCGUAGUUGCUCAUGCGGGUUAGCUCGUAGGCAAACUGCUCGCCAUUAAUGGGGGCACUUGGAGCCUUA ....((((......((((.....))))(((((....))))).((((((.........(((((..((((((....)))))))))))..(((((.(((....)))))))))))))).)))). ( -41.60) >DroEre_CAF1 3861 120 - 1 UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUGCGGGCCAGCUCGUUGGCGAACUGCUCGCCAUUAAUAGGUUCACUUGGGGCCUUA .((((.((.......((((.((((((((((.((((((((((...(........)...))))....))))))))))))))))))))........)).)))).((((((.....)))))).. ( -37.76) >DroYak_CAF1 3761 120 - 1 UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUGCGGGUUAGCUCGUAGGCGAACUGCUCGCCAUUAAUGGGUGCACUUGGGGCCUUA ......((((....((((.....))))(((((....)))))))))....(((((.(((((((((((((((....))))).(((((.....)))))....))))))).))))))))..... ( -39.40) >consensus UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUGCGGGUUAGCUCGUAGGCAAACUGCUCGCCAUUAAUGGGGGCACUUGGAGCCUUA ....((((......((((.....))))(((((....))))).(((((......(((((((((..((((((....)))))))))).)))))..(((.........)))..))))).)))). (-33.90 = -34.30 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:03 2006