Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,391,239 – 4,391,359 |
Length | 120 |
Max. P | 0.527913 |
Location | 4,391,239 – 4,391,359 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.42 |
Mean single sequence MFE | -40.02 |
Consensus MFE | -25.92 |
Energy contribution | -26.76 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.22 |
Mean z-score | -1.85 |
Structure conservation index | 0.65 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4391239 120 - 27905053 GGCAGUUGUGCAAUGGAUUUCUGGGGAGAGGCAGCGGCGGAUCGCCUAGGAGAAGGCGCAAUCGGUGGUGAAGAUAACGCCGUAACUGGCGAAGUCGGAACAGAUUUCAUUGCGACAGCG ....(((((((((((((..((((......(((.((.((.((((((((......)))))..))).)).))........(((((....)))))..)))....)))).)))))))).))))). ( -45.10) >DroSec_CAF1 3595 120 - 1 GGAGGUUGUGCAAUGGAUUUCUGGGGAGCGGUAAUGGCGGAUUGCCUAGGAGAAGGCGCAAUCGGUGGUGACGAUAACGCGCUAACUGGCGAGGUCGGAAUAGAUUUCAUUGCAACAGCA ....(((((((((((((((((((((.(((.((....)).).)).))))))))..(((((.((((.......))))...)))))..(((((...))))).......)))))))).))))). ( -41.00) >DroSim_CAF1 3581 120 - 1 GGAGGUUGUGCAAUGGAUUUCUGGGGAGAGGUAACGGCGGAUUGCCUAGGAGAAGGCACAAUCGGUGGUGAAGAUAACGCCGUAACUGGCGAAGUCGGAACAGAUUUCAUCGCGACAGCG ....(((((((.(((((..((((..........((.((.((((((((......)))))..))).)).))...(((..(((((....)))))..)))....)))).))))).)).))))). ( -38.90) >DroEre_CAF1 3501 120 - 1 GGAGGUUGUGCAAUGGAUUUCUGGGUAGAGGCAGCGGCUGGUUGCCUAGGAGAAGACGCAAUCGGUGAUGAAGAUGACGCCGUAACUGGCGCUGUCGGAACAGAUUUCAUCGGUAUAGAG .....((((((....((..((((..(...((((((.(((((((((((......))..)))))))))............((((....)))))))))).)..))))..))....)))))).. ( -39.30) >DroYak_CAF1 3404 117 - 1 GGAGGUUGUGGAAUGGAUUUCUGGGGAGAGACAGCGGCGGAUCGCCCA---GAAGACGCAAUCGGUGGUGAAGAAGUCGCCGCAACUGGCGAUGUCGGAAUAGAUUUCAUAGGGGUAGAA .....(((((((((...((((((((..((..(......)..)).))))---)))).(((.....(((((((.....))))))).....)))............)))))))))........ ( -35.80) >consensus GGAGGUUGUGCAAUGGAUUUCUGGGGAGAGGCAGCGGCGGAUUGCCUAGGAGAAGGCGCAAUCGGUGGUGAAGAUAACGCCGUAACUGGCGAAGUCGGAACAGAUUUCAUCGCGACAGCG ....(((((((.(((((..((((..........((.((.((((((((......)))))..))).)).))...(((..(((((....)))))..)))....)))).))))).)).))))). (-25.92 = -26.76 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:02 2006