Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,390,719 – 4,390,839 |
Length | 120 |
Max. P | 0.639410 |
Location | 4,390,719 – 4,390,839 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.83 |
Mean single sequence MFE | -38.14 |
Consensus MFE | -29.28 |
Energy contribution | -29.60 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.32 |
Mean z-score | -1.63 |
Structure conservation index | 0.77 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4390719 120 - 27905053 AGGAACUCUGUCGCUCUUUGCAGAUUUGUUCAAUUUCAGCUGCAAGAAUAGGGUUCCUGGCAGGUGAGGUCACCUUUGUCUGCAGCGGAUUUUCCGGCUCUGGUUCUUGUGAUAGUUCCA .((((((..(((((.....((((...((........)).))))(((((((((((.....(((((..(((....)))..)))))..(((.....)))))))).))))))))))))))))). ( -42.40) >DroSec_CAF1 3087 120 - 1 AGGAACUCUGUCGCUCUUUGCAGAUUUGUUCAAUUUCAGCGGCAAGAAUGGGGUUCCUGGCAGGUGAGGUCACCUUUGUCUGCAGCGUCUUUUCUGGCUCUGGUUCUUGUGAUGGUUCCA .((((((..(((((.....))....................((((((((.(((......(((((..(((....)))..)))))...(((......)))))).))))))))))))))))). ( -37.70) >DroSim_CAF1 3066 120 - 1 AGGAACUCUGUCGCUCUUUGCAGAUUUGUUCAAUUUCAGCGGCGAGAAUGGGGUUCCUGGCAGGUGAGGUCACCUUUGUCUGCAGCGUCUUUUCUGGCUCUGGUUCUUGUGAUGGUUCCA (((((((((((..(((.((((.((..(.....)..)).)))).))).))))))))))).(((((..(((....)))..)))))((.(((......))).))((..((......))..)). ( -38.30) >DroEre_CAF1 2993 120 - 1 AGGAACUCUGUCGCUCUCUGCAGAUUUGUUCAAUUUCAGCAACAAGAACGGGGUUCCUGGCAGGUGACUUCACCGUUGUCUGCAGCGGAUUUUCCGGCUCUCGUUCUUCUGAUAGUUCCU (((((((((((........)))))...........((((....(((((((((((.....(((((..((......))..)))))..(((.....))))).)))))))))))))..)))))) ( -40.80) >DroYak_CAF1 2893 111 - 1 AAGAAUUCUGCCCCUCUCUGCAGAUUUGUUCAAUUUCAGUGGCAAGAAUGGAGUUCCUGGCAGGUGACUU---------CUGCAGCGGGUUUUCUGGCUCUGCUUUUUCUGAUAGUUUCU ..(((((((((........)))))...))))....((((.((((.((.(((((..(((((((((.....)---------))))..))))..)))))..))))))....))))........ ( -31.50) >consensus AGGAACUCUGUCGCUCUUUGCAGAUUUGUUCAAUUUCAGCGGCAAGAAUGGGGUUCCUGGCAGGUGAGGUCACCUUUGUCUGCAGCGGAUUUUCUGGCUCUGGUUCUUGUGAUAGUUCCA .((((((((((........))))).................(((((((((((((.....(((((..(((....)))..)))))..(((.....)))))))).))))))))....))))). (-29.28 = -29.60 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:01 2006