Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,383,803 – 4,383,903 |
Length | 100 |
Max. P | 0.935462 |
Location | 4,383,803 – 4,383,903 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 73.92 |
Mean single sequence MFE | -20.03 |
Consensus MFE | -7.68 |
Energy contribution | -8.52 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.14 |
Mean z-score | -2.09 |
Structure conservation index | 0.38 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4383803 100 - 27905053 AAGCAACACAGCAAUAAAUGCUUUAAUAUUGGCUC----GAGUUUUCCGCAGCAAGUGGAAAACUGAAAAACAGUUGCAUCUGCCAUUAACAU-UUGCACAAAAU ..((((...((((.....))))....((.((((((----.((((((((((.....)))))))))))).....((......)))))).))....-))))....... ( -24.50) >DroSim_CAF1 61181 100 - 1 AAGCAGCACAACAAUAAAUGCUUUAAUAUUGGCUC----GAGUUUUCCGCUGCAAUUGGAAAACUGAAAAACAGUUGCAUCUGCAAUUUACAU-UUGCACAAAAU ..(((((............(((........)))((----.(((((((((.......)))))))))))......)))))...(((((.......-)))))...... ( -23.00) >DroEre_CAF1 72158 100 - 1 AAGCAACACAACAAUAAAUGCUUUAAUUUUCGCUC----GAGCUUUCCCCAGCAACUGGAAAGCUGAAAAACGGAUGCAUCUGCUAUUUGCAU-UUGCGCAAAAU (((((.............)))))..((((((((((----.((((((((.........)))))))))).....(((((((.........)))))-))))).))))) ( -22.52) >DroYak_CAF1 64217 100 - 1 AAGCAACACAACAAUAAAUGCUUUAAUUUUGGCUC----GAGUUUUCCCCAGCAAUUGGAAAACUGAAAAACAGAUGCAUCUGCUAUUUACAU-UUGCACAAAAU (((((.............)))))..((((((((((----.((((((((.........))))))))))....((((....))))..........-..)).)))))) ( -17.22) >DroAna_CAF1 68435 84 - 1 CAGGCACAGGGC---UAAUGCUUUAAAAUUGCCACAAUCAAAUAUUCACCU--AUUUGGAAAUGU----------------UCCUAUUAACCCAAUGUACAGAAU .(((.(((.(((---.(((........))))))....(((((((......)--))))))...)))----------------.))).................... ( -12.90) >consensus AAGCAACACAACAAUAAAUGCUUUAAUAUUGGCUC____GAGUUUUCCCCAGCAAUUGGAAAACUGAAAAACAGAUGCAUCUGCUAUUUACAU_UUGCACAAAAU ..(((..............(((........))).......((((((((.........))))))))................)))..................... ( -7.68 = -8.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:59 2006