Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,380,191 – 4,380,299 |
Length | 108 |
Max. P | 0.607474 |
Location | 4,380,191 – 4,380,299 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.53 |
Mean single sequence MFE | -15.62 |
Consensus MFE | -8.88 |
Energy contribution | -9.55 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.57 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4380191 108 + 27905053 CUUUUUUUUUCAUUCCAUUUAGAAUCCAUACUUUUUUUCAAAUCAUUCGUAUAAUCCCCAUUUAGACACGCUGCGUGACCUUAUGCAGCACUUAAAAGUAAUUUCGAA .....................(((....(((((((.............((.(((.......))).))..((((((((....))))))))....)))))))..)))... ( -16.40) >DroPse_CAF1 65061 106 + 1 UGCUC-UUAUAUUCCUAUUGCUUUUCCAUCCCUGCUUUCAAGUCAAUCAUUUUACAGGCAUUUAGGCAGGGCGCCCGAACUUAUGCAGCACACAAAAGUGAUUGC-AA .....-.......................((((((((....(((............)))....))))))))............((((((((......))).))))-). ( -21.80) >DroSec_CAF1 67257 100 + 1 CUUU---UUUCAUUCCAUUUAGAAUCCAUACU----UUCAAAUCAUUCGUAUAAUCCCC-UUUAGACACGCUGCGUGACCUUAUGCAGCACUUAAAAGUAAUUUCGAA ....---..............(((....((((----((..........((.(((.....-.))).))..((((((((....)))))))).....))))))..)))... ( -16.10) >DroSim_CAF1 57596 107 + 1 CUUUU-UUUUCAUUCCAUUUAGAAUACAUACUCUUUUUCAAAUCAUUCGUAUAAUCCCCAUUUAGACACGCUGCGUGACCUUAUGCAGCACUUAAAAGUAAUUUCGAA .....-...............(((....((((................((.(((.......))).))..((((((((....)))))))).......))))..)))... ( -13.80) >DroEre_CAF1 68631 106 + 1 CCCUU-UUUUAUUACCAUUUAGAAUCCAUCCU-UUUUUCAAAUCAAUCGUAUAAUCCCCAUUUAGACACGCUGCGUGACCUUAUGCAGCACUUAAAAGUAAUUUCGAA .....-....(((((..(((((..........-...............((.(((.......))).))..((((((((....))))))))..))))).)))))...... ( -13.30) >DroYak_CAF1 60506 90 + 1 CCAUU-UU----------------UCCAUCCU-UUUUUCAAAUCAAUCGCAUAAUCCCCAUUUAGACACGCUGCGUGACCUUAUGCAGCACUUAAAAGUAAUUUCGAA .....-..----------------........-.............(((....................((((((((....))))))))(((....))).....))). ( -12.30) >consensus CUUUU_UUUUCAUUCCAUUUAGAAUCCAUACU_UUUUUCAAAUCAAUCGUAUAAUCCCCAUUUAGACACGCUGCGUGACCUUAUGCAGCACUUAAAAGUAAUUUCGAA .....................................................................((((((((....))))))))................... ( -8.88 = -9.55 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:58 2006