Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,373,974 – 4,374,079 |
Length | 105 |
Max. P | 0.728953 |
Location | 4,373,974 – 4,374,079 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -15.20 |
Consensus MFE | -10.74 |
Energy contribution | -10.70 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.71 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4373974 105 - 27905053 CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCUCAUUCGAUAUGAUAUCA-UUCCCCCUUCUCAUUUUAA-CCCCAAAGAUUUUCCCA .......(((((.((((...((((....(((((....))))).....)))).....)))))))))....-...................-................. ( -14.90) >DroSim_CAF1 51464 104 - 1 CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCUCAUUCGAUAUGAUAUCA-UGCCCCCACCC-ACUUUAC-CCCCGAAGAUUUUCCCA .......(((((.((((...((((....(((((....))))).....)))).....)))))))))....-...........-.((((..-....))))......... ( -15.70) >DroEre_CAF1 62403 100 - 1 CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCCCAUUCGAUAUGAUAUCA-UCC---CACCC-A-UUUAU-ACCCGAAGAUUUUCGCA .......(((((.((((..(((..(...(((((....)))))......)..)))..)))))))))....-...---.....-.-.....-...((((....)))).. ( -15.40) >DroYak_CAF1 53725 100 - 1 CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCCCAUUCGAUAUGAUAUCA-UCC---CACCC-A-UUUAU-UCCCAAAGAUUUUCCCA .......(((((.((((..(((..(...(((((....)))))......)..)))..)))))))))....-...---.....-.-.....-................. ( -14.80) >DroAna_CAF1 59132 101 - 1 GACAAUCAUCAUUAUUAUCUGGCUCAUUUGAGAGAAAUGCCAUUUCCAGUUUCACUUGAAAGCCCUUCAAUGGUUUCACCC-A----AGACCCGAAAGACUUACC-A ....................((((..((..((.(((((..........))))).))..)))))).......(((((.....-.----)))))(....).......-. ( -15.20) >consensus CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCUCAUUCGAUAUGAUAUCA_UCC___CACCC_A_UUUAU_CCCCAAAGAUUUUCCCA ...((((.........(.((((......(((((....)))))...)))).)......(((.....))).............................))))...... (-10.74 = -10.70 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:56 2006