Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,368,656 – 4,368,751 |
Length | 95 |
Max. P | 0.601366 |
Location | 4,368,656 – 4,368,751 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 80.96 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -18.58 |
Energy contribution | -19.08 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -1.31 |
Structure conservation index | 0.72 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4368656 95 + 27905053 GUUGCUCAUUU--CAUAUGCGAUGUAGGUUGGUAAAUCUGAAAGGGGCUGGCAAUCGCUUUCAAUUGCCAGAGCCCAAAACAAUCCUUUCCACUCCA (((((......--.....)))))...((.(((............(((((((((((........))))))..))))).............)))..)). ( -23.61) >DroSec_CAF1 55710 95 + 1 GUUGUACAUUU--CAUAUGCGAUGCAGGUUGGUAAAUCUGAAAGGGGCUGGCAAUCGCUUCCAAUUGCCGGAGUCCCGAACAAUCCUUUCCACUCCA (((((.(....--...........((((((....))))))...((((((((((((........))))))..))))))).)))))............. ( -24.30) >DroSim_CAF1 46047 94 + 1 -UUGUACAUUU--CAUAUGCGAUGCAGGUUGGUCAAUCUGAAAGGGGCUGGCAAUCGCUUCCAAUUGCCGGAGUCCCGAACAAUCCUUUCCACUCCA -((((.(....--...........((((((....))))))...((((((((((((........))))))..))))))).)))).............. ( -23.20) >DroEre_CAF1 57111 94 + 1 -CUGUCCAUUU--CAUAUGAGAUGCAGGUUGCGAAAUCUGAAAGGGGCUGGCAAACGCUUCCAAUUGCCAAAGCCCCGAACAAUCCUUUCCACUCCA -.....(((((--(....))))))((((((....))))))...(((((((((((..........)))))..)))))).................... ( -27.00) >DroYak_CAF1 48341 95 + 1 UCUGUCCAUUU--CAUAUGCGUUGCAGGUUAGGAAAUCUGAAAGGGGCUGGCAAUCGCUUCCAAUUGCCAAAGCCCCGAACAAUCCUUUCCACUCCA ...........--....(((...)))((..((((....((...((((((((((((........))))))..))))))...)).))))..))...... ( -27.10) >DroPer_CAF1 45638 94 + 1 GGUG-AGACUGUAUGUAU-GGUUCCAGGUUGGACAAUCUGAAAAGGGCUGGCAAUCGUUCCCAAUAGCUGAAGCAGGGACCACAGCACAGCAGUCC- ....-.((((((.(((.(-((((((.(((((..((.(((....)))..)).)))))..........((....)).)))))))..)))..)))))).- ( -30.00) >consensus GUUGUACAUUU__CAUAUGCGAUGCAGGUUGGUAAAUCUGAAAGGGGCUGGCAAUCGCUUCCAAUUGCCAAAGCCCCGAACAAUCCUUUCCACUCCA ........................((((((....))))))...((((((((((((........))))))..)))))).................... (-18.58 = -19.08 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:54 2006