Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,363,861 – 4,363,960 |
Length | 99 |
Max. P | 0.626252 |
Location | 4,363,861 – 4,363,960 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.31 |
Mean single sequence MFE | -34.21 |
Consensus MFE | -26.14 |
Energy contribution | -26.54 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.76 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4363861 99 + 27905053 C--------------ACUUACCCCC--UCCGCACAACACGUGCAGCAAUGGCGGCCCACUCCAUUUUCAGCGCCCACUCGCCCACUCGUGUGUGUGGUCACAGGGGUGGACCGCA .--------------..........--...((((.....)))).......((((.(((((((.......(((......)))((((........)))).....))))))).)))). ( -34.60) >DroSec_CAF1 50986 101 + 1 C--------------ACUUACCCCCUCUCCACACAACACGUGCAGCAAUGGCGGCCCACUCCAUUUUCAGCGCCCACUCGCCCACUCGUGUGUGUGGUCACAGGGGUGGACCGCA .--------------..(((((((....(((((((.((((.(....(((((.(.....).)))))....(((......)))...).))))))))))).....)))))))...... ( -33.50) >DroSim_CAF1 41322 101 + 1 C--------------ACUUACCCCCUCUCCGCACAACACGUGCAGCAAUGGCGGCCCACUCCAUUUUCAGCGCCCACUCGCCCACUCGUGUGUGUGGUCACAGGGGUGGACCGCA .--------------...............((((.....)))).......((((.(((((((.......(((......)))((((........)))).....))))))).)))). ( -34.60) >DroEre_CAF1 51244 106 + 1 CACUUGCCACUUGCCCCCUACU--CACCCCUCACCACACGUACAGCAAUGGCGACCCACUCCACUUUCAGCGCCCACUCG------AGUGUGUGUGGUCAC-GGGGUGGACCGCA .....................(--((((((..(((((((((((......((((.................))))......------.)))))))))))...-)))))))...... ( -30.55) >DroYak_CAF1 43419 109 + 1 CGCUUGCCACUUGCCACUUGCCCCCUCCCCCCACCACACGUGCAGCAAUGGCGACCCACUCCAUUUGCAGCGCCCACUCG------UGUGUGUGUGGUCACAGGGGUGGACCGCA .((...((((..((.....)).((((......(((((((((((.(((((((.(.....).))).)))).)))).(((...------.))).)))))))...))))))))...)). ( -37.80) >consensus C______________ACUUACCCCCUCUCCGCACAACACGUGCAGCAAUGGCGGCCCACUCCAUUUUCAGCGCCCACUCGCCCACUCGUGUGUGUGGUCACAGGGGUGGACCGCA ......................................(((......)))((((.(((((((.......((((.(((..........))).)))).......))))))).)))). (-26.14 = -26.54 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:53 2006