Locus 1528

Sequence ID 3R_DroMel_CAF1
Location 4,359,611 – 4,359,703
Length 92
Max. P 0.907300
window2537

overview

Window 7

Location 4,359,611 – 4,359,703
Length 92
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 83.90
Mean single sequence MFE -20.79
Consensus MFE -14.65
Energy contribution -15.65
Covariance contribution 1.00
Combinations/Pair 1.03
Mean z-score -2.20
Structure conservation index 0.70
SVM decision value 1.05
SVM RNA-class probability 0.907300
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4359611 92 + 27905053
CAAUUAGUUUUUGUUGUUGUUAAAUCGUUUUCAAAAAUGUA-------------------------UUUAUACCCUAAGUGCAAACAAUGAGCAAUGACUAAAUCCAGAACCAUUUA
...((((((.(((((((((((.....(....).....((((-------------------------((((.....)))))))))))))).))))).))))))............... ( -16.40)
>DroSec_CAF1 46914 117 + 1
CAAUUAGUUGUUGUUGUUGUUAAAUCGUUUUCAAAAAUGUAUUUAUAAGUUUAAAUGCAUACAUUUUUUAUACCCUAAGUGCAAACAAUGAGCAACGACUAAAUCCAGAACCAUUUA
...((((((((((((((((((...............(((((((((......))))))))).(((((..........)))))..)))))).))))))))))))............... ( -26.00)
>DroSim_CAF1 37224 117 + 1
CAAUUAGUUAUUGUUGUUGUUAAAUCGUUUUCAAAAAUGUAUUUAUCACUUUAAAUGUAUACAUUUUUUAUACCCUAAGUGCAAACAAUGAGCAAUGACUAAAUCCAGAACCAUUUA
...(((((((((((((((((((((((((((....))))).))))..(((((.....(((((.......)))))...)))))..)))))).))))))))))))............... ( -23.10)
>DroEre_CAF1 46912 117 + 1
CAAUUAGUUAUUGUUGUUGCUAAAUCGUUUCCAAAAAUGUAUUUAUCAUUUUAAAUGUAUACUUUUUUCAUUCCCCAAGUGCAAACAAUGAGCAAUGACUAAAUCCAGAACUAUUUU
...((((((((((((((((.((((((((((....))))).)))))..........(((((..................)))))..)))).))))))))))))............... ( -17.67)
>consensus
CAAUUAGUUAUUGUUGUUGUUAAAUCGUUUUCAAAAAUGUAUUUAUCA_UUUAAAUGUAUACAUUUUUUAUACCCUAAGUGCAAACAAUGAGCAAUGACUAAAUCCAGAACCAUUUA
...((((((((((((((((((....(((((....)))))((((((......))))))..........................)))))).))))))))))))............... (-14.65 = -15.65 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:52 2006