| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,358,407 – 4,358,498 |
| Length | 91 |
| Max. P | 0.558288 |
| Location | 4,358,407 – 4,358,498 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -28.48 |
| Consensus MFE | -18.29 |
| Energy contribution | -18.82 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4358407 91 + 27905053 UCAAAAAUAAUGCUCGCGGCUCAUGCGGCGCGUAGCGAAAUGGCUGUGGUGAAAACAGCGGCACUAACAGAUGCAUUAGCUGCAGAACGUC-------------------- .........(((.((((((((.(((((((.....))......(((((.((....)).))))).........))))).)))))).)).))).-------------------- ( -28.50) >DroPse_CAF1 38078 86 + 1 UGGGAAAAAAUUCUCGCGGGUCAUGCUGCAUGGAGCGA-AUGGGUGUGGUG----CAGCGGCACUAACAGCUGCAUUAGCUCCGGAAUGGC-------------------- .(((((....)))))((((......)))).((((((.(-((((((.(((((----(....))))))...))).)))).)))))).......-------------------- ( -31.40) >DroEre_CAF1 45733 91 + 1 UCAAAAAUAAUGCUCGCGGCUCAUGCGGCGCGGAGCGAAAUGGCUGUGGUGAAAACAGCGGCACUAACAGAUGCAUUAGCUGCAGAACGGC-------------------- ...............((((((.(((((((.....))......(((((.((....)).))))).........))))).))))))........-------------------- ( -27.90) >DroYak_CAF1 37741 91 + 1 UCAAAAAUAAUGCUCGCGGCUCAUGUGGCGCGAAGCGAAAUGGCUGUGGUGAAAACAGCGGCACUAACAGAUGCAUUAGCUGCAGAACGGC-------------------- .......(((((((((((.(......).))))).........(((((.((....)).)))))..........))))))((((.....))))-------------------- ( -27.80) >DroAna_CAF1 33151 111 + 1 UCAAAAAUAAUGCUCGCGGCUUAUGCGGCAUGGAGCGAAAUGGUUGUGGUAAAAACAGCGGCACUAACAGAUGCAUUAGCUGCAGGAUAUACGGGGAAUGAAUAGGGGGAA ..........(.(((((((((.(((((((.....))....((((.((.((.......)).)))))).....))))).)))))).(......)))).).............. ( -23.90) >DroPer_CAF1 34575 86 + 1 UGGGAAAAAAUUCUCGCGGGUCAUGCUGCAUGGAGCGA-AUGGGUGUGGUG----CAGCGGCACUAACAGCUGCAUUAGCUCCGGAAUGGC-------------------- .(((((....)))))((((......)))).((((((.(-((((((.(((((----(....))))))...))).)))).)))))).......-------------------- ( -31.40) >consensus UCAAAAAUAAUGCUCGCGGCUCAUGCGGCACGGAGCGAAAUGGCUGUGGUGAAAACAGCGGCACUAACAGAUGCAUUAGCUGCAGAACGGC____________________ ...............((((((.((((.((.....))....(((.(((.((.......)).))))))......)))).))))))............................ (-18.29 = -18.82 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:51 2006