| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,352,230 – 4,352,343 |
| Length | 113 |
| Max. P | 0.500000 |
| Location | 4,352,230 – 4,352,343 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 85.02 |
| Mean single sequence MFE | -23.06 |
| Consensus MFE | -13.82 |
| Energy contribution | -12.98 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4352230 113 - 27905053 ACCAAUCCCACAGACAUCAACCGAAAUAAAACUUUUCCCCAUUGAGUUGCAAC-GACUUCAGGGUAUCCCCAGUUUCGUAGUUCUUGAAACAAGUUGUGCACUUUUACUCAUUU ......................((((.......)))).....(((((((((.(-(((((..(((....))).((((((.......)))))))))))))))).....)))))... ( -22.60) >DroSec_CAF1 39531 112 - 1 CCCAACCGCACAGAAAUCAACCGAAAUAA-ACUUUCCCCCUUUGAGUUACAAC-GACUUCAGGGUAUUCCCAGUUUCGUAGCUCUUGAAACAAGAUGUGCACUUUUAUUCAUUU .......(((((....((((..((((...-..)))).......(((((((...-((((...(((....)))))))..))))))))))).......))))).............. ( -22.00) >DroSim_CAF1 29860 112 - 1 CACAACCCCACAGAAAUCAACCGAAAUAA-ACUUUCCCCCAUUGAGUUACAAC-GACUUCAGGGUAUCUCCAGUUUCGUAGCUCUUGAAACAAGUUGUGCACUUUUAUUCAUUU ((((((.....(((........((((...-..)))).(((...(((((.....-)))))..)))..)))...((((((.......))))))..))))))............... ( -17.70) >DroEre_CAF1 39575 103 - 1 --------CACAGACAUCAACUGAAAUAA-ACUUUUCCCUG-CGAGCUACGAA-AACUUCAGGGUAUCCCCUGUUUCGUGGCUCUUGAAACAAGUUGUGCACUUUUAUUCAUUC --------....(.((.(((((((((...-...))))....-.((((((((((-(....(((((....))))))))))))))))........)))))))).............. ( -29.30) >DroYak_CAF1 31359 113 - 1 GCCAACCCCGCAGACAUCAGCUGAAAUAA-ACUUUUCCCCAUUGAGUUACGAAAAACUUCAGGGUAUCCCCUGUUUCGUGUCUCUUGAAACAAGUUGUGCAAUUUUAUUCAUUU ((((((...((........)).((((...-...))))..((..(((.(((((((.....(((((....)))))))))))).))).))......)))).)).............. ( -23.70) >consensus CCCAACCCCACAGACAUCAACCGAAAUAA_ACUUUUCCCCAUUGAGUUACAAC_GACUUCAGGGUAUCCCCAGUUUCGUAGCUCUUGAAACAAGUUGUGCACUUUUAUUCAUUU ........(((((...((((..((((......)))).......(((((((....((((...(((....)))))))..)))))))))))......)))))............... (-13.82 = -12.98 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:49 2006