Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,348,137 – 4,348,257 |
Length | 120 |
Max. P | 0.995966 |
Location | 4,348,137 – 4,348,257 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -46.58 |
Consensus MFE | -41.96 |
Energy contribution | -42.96 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.05 |
Mean z-score | -1.51 |
Structure conservation index | 0.90 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4348137 120 + 27905053 CGCAUGGUUGCCAGCACUUUUGGUGAGCUCCAUAUCGCUAGCAGUCGAGCGUCCGCAGCGCCGUGCUCCACUGGCAUUGUAUGUGGCCAAUGUGGGCAUCGAAACGCUAUGGAAAAUGUU (((.((..(((.(((.....(((......)))....))).)))..)).)))((((.((((.(((((.((((((((..........))))..))))))).))...)))).))))....... ( -42.20) >DroSec_CAF1 35385 120 + 1 AGCCUGGGUGCCAGCUCUUUUGGUGAGCUCCAUAUCGCUGGCAGUCGAGCGUCCGCAGCGCCGUGCUCCACUGGCAUUGUAUGUGGCCAAUGUGGGCAUCGAAACGCUGUGGAAAAUGCU .((.(((.(((((((.....(((......)))....))))))).))).)).(((((((((.(((((.((((((((..........))))..))))))).))...)))))))))....... ( -53.70) >DroSim_CAF1 25711 120 + 1 AGCCUGGGUGCCAGCUCUUUUGGUGAGCUCCAUAUCGCUGGCAGUCGAGCGUCCGCAGCGCCGUGCUCCACUGGCAAUGUACGUGGCCAAUGUGGGCAUCGAAACGCUGUGGAAAAUGCU .((.(((.(((((((.....(((......)))....))))))).))).)).(((((((((.(((((.((((((((.((....)).))))..))))))).))...)))))))))....... ( -54.70) >DroEre_CAF1 35491 120 + 1 AACCUGGUUGCCUGCACUUUUGGUGAGCUCCAUAUCGCUGGCAGUCGAGCGUCCGGAGCGCCGUACUCCACUGGCAUUGUAUGUGGCCAAUGUGGGCAUCGAAACGCUGUGGAAAAUGCU ....((..((((.((.....(((......)))....)).))))..))((((((((.((((.((...(((((((((..........))))..)))))...))...)))).))))...)))) ( -39.50) >DroYak_CAF1 27283 120 + 1 AACCUGGUUGCCAGCACUCUUGGUGAGCUCCAUAUCGCUGGCAGUCGAGCGUCCGGAGCGACGUACUCCACUGGCAUUGUAUGUGGCCAAUGUUGGCAUCGAAACGCUUUGGAAAAUGUU ....((..(((((((.....(((......)))....)))))))..))....(((((((((((((((............)))))).((((....)))).......)))))))))....... ( -42.80) >consensus AGCCUGGUUGCCAGCACUUUUGGUGAGCUCCAUAUCGCUGGCAGUCGAGCGUCCGCAGCGCCGUGCUCCACUGGCAUUGUAUGUGGCCAAUGUGGGCAUCGAAACGCUGUGGAAAAUGCU ....((..(((((((.....(((......)))....)))))))..))(((((((((((((.(((((.((((((((..........))))..))))))).))...)))))))))...)))) (-41.96 = -42.96 + 1.00)
Location | 4,348,137 – 4,348,257 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -42.80 |
Consensus MFE | -40.68 |
Energy contribution | -41.16 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.95 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.995966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4348137 120 - 27905053 AACAUUUUCCAUAGCGUUUCGAUGCCCACAUUGGCCACAUACAAUGCCAGUGGAGCACGGCGCUGCGGACGCUCGACUGCUAGCGAUAUGGAGCUCACCAAAAGUGCUGGCAACCAUGCG .......(((.((((((..((.(((((((..((((..........)))))))).))))))))))).)))(((..(..((((((((...(((......)))....))))))))..)..))) ( -43.50) >DroSec_CAF1 35385 120 - 1 AGCAUUUUCCACAGCGUUUCGAUGCCCACAUUGGCCACAUACAAUGCCAGUGGAGCACGGCGCUGCGGACGCUCGACUGCCAGCGAUAUGGAGCUCACCAAAAGAGCUGGCACCCAGGCU .......(((.((((((..((.(((((((..((((..........)))))))).))))))))))).))).((..(..(((((((....(((......))).....)))))))..)..)). ( -48.20) >DroSim_CAF1 25711 120 - 1 AGCAUUUUCCACAGCGUUUCGAUGCCCACAUUGGCCACGUACAUUGCCAGUGGAGCACGGCGCUGCGGACGCUCGACUGCCAGCGAUAUGGAGCUCACCAAAAGAGCUGGCACCCAGGCU .......(((.((((((..((.(((((((..((((..........)))))))).))))))))))).))).((..(..(((((((....(((......))).....)))))))..)..)). ( -48.20) >DroEre_CAF1 35491 120 - 1 AGCAUUUUCCACAGCGUUUCGAUGCCCACAUUGGCCACAUACAAUGCCAGUGGAGUACGGCGCUCCGGACGCUCGACUGCCAGCGAUAUGGAGCUCACCAAAAGUGCAGGCAACCAGGUU .(((((((((((.((((....))))...(((((........)))))...)))))....((.((((((..((((.(....).))))...))))))...))..)))))).(....)...... ( -35.50) >DroYak_CAF1 27283 120 - 1 AACAUUUUCCAAAGCGUUUCGAUGCCAACAUUGGCCACAUACAAUGCCAGUGGAGUACGUCGCUCCGGACGCUCGACUGCCAGCGAUAUGGAGCUCACCAAGAGUGCUGGCAACCAGGUU .......(((..((((...((.(((...(((((((..........)))))))..))))).))))..))).((..(..((((((((...(((......)))....))))))))..)..)). ( -38.60) >consensus AGCAUUUUCCACAGCGUUUCGAUGCCCACAUUGGCCACAUACAAUGCCAGUGGAGCACGGCGCUGCGGACGCUCGACUGCCAGCGAUAUGGAGCUCACCAAAAGUGCUGGCAACCAGGCU .......(((.((((((..((.(((...(((((((..........)))))))..))))))))))).))).((..(..((((((((...(((......)))....))))))))..)..)). (-40.68 = -41.16 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:47 2006