Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,347,768 – 4,347,888 |
Length | 120 |
Max. P | 0.827622 |
Location | 4,347,768 – 4,347,888 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -40.96 |
Consensus MFE | -34.62 |
Energy contribution | -34.74 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.50 |
Structure conservation index | 0.85 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4347768 120 + 27905053 GCCGAGGCCGCAUACAAAUGCAGCUGCCAGGAGUUCGUGCAUCCUUGGACCUCCAGCUGCGCCUGUGCGACGGCUGGGAUGCUAUUAUCCCUAAUCCCUGGCACAUUUAAGACCUAUAGU ((((.((((((.((((..((((((((((((((((....)).))).))).....))))))))..)))).).)))))((((((....)))))).......)))).................. ( -43.60) >DroSec_CAF1 35018 120 + 1 GCUGAGGCCGCCUUCAAAUGCAGCUGCCAGGAGUUCGUGCAUCCUUGGACCUCCAGCUGCGCCUGUGCGACGGCUGGAAUGCUAUUAUCCCUAAUCCCUGGCACAUUUAAGACCUAUAGC (((((((....(((.(((((....(((((((.(((((........))))).(((((((((((....))).))))))))..................))))))))))))))).))).)))) ( -41.30) >DroSim_CAF1 25342 120 + 1 GCUGAGGCCGCCUUCAAAUGCAGCUGCCAGGAGUUCGUGCAUCCUUGGACCUCCAGCUGCGCCUGUGCGACGGCUGGAAUGCUAUUAUCCCUAAUCCCUGGCACAUUUAAGACCUAUAGU (((((((....(((.(((((....(((((((.(((((........))))).(((((((((((....))).))))))))..................))))))))))))))).))).)))) ( -39.90) >DroEre_CAF1 35135 120 + 1 ACUGAAGUCGCCUUCAAAUGCAGCUGCCAGGAGUUCGUCCAUCCUUGGACUUCGAGCUGCGCCUGCGCGACGGCUGGGAUGCUAUUAUCGCUAAUUCCUGGCACAUUUAAGACUUAUAGU (((((((((((........)).(.(((((((((((.(((((....)))))(((.((((((((....))).))))).))).............))))))))))))......))))).)))) ( -45.60) >DroYak_CAF1 26925 120 + 1 GCUGAGAUCGCCUUUAAAUGCAGCUGCCAGGAGUUCGCCCAUCCUUGGACGUCGAGCUGCGCCUGCGCGACGGCUGGCAUGCUUUUAUCCCUAAUCCCUGGCACAUUUAAGACUUAUAGU ..((((.((....(((((((....(((((((.(((((........)))))(((.((((((((....))).))))))))..................)))))))))))))))))))).... ( -34.40) >consensus GCUGAGGCCGCCUUCAAAUGCAGCUGCCAGGAGUUCGUGCAUCCUUGGACCUCCAGCUGCGCCUGUGCGACGGCUGGAAUGCUAUUAUCCCUAAUCCCUGGCACAUUUAAGACCUAUAGU (((((((.(((........)).(.(((((((.(((((........))))).(((((((((((....))).))))))))..................))))))))......).))).)))) (-34.62 = -34.74 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:45 2006