Locus 1521

Sequence ID 3R_DroMel_CAF1
Location 4,341,295 – 4,341,385
Length 90
Max. P 0.881141
window2529

overview

Window 9

Location 4,341,295 – 4,341,385
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 88.37
Mean single sequence MFE -14.92
Consensus MFE -13.14
Energy contribution -12.87
Covariance contribution -0.28
Combinations/Pair 1.10
Mean z-score -1.86
Structure conservation index 0.88
SVM decision value 0.92
SVM RNA-class probability 0.881141
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4341295 90 + 27905053
-------AAGAAAUAAGCGAAUGAAAGCAAUUAAUAAAAUAACAAGUUUGUGCAAAAUUAAUUGUGUAUUAUGCAAAAGGCUUGCUAAUGGCAGGAU
-------.........(((((((...(((((((((......(((....))).....))))))))).)))).)))......(((((.....))))).. ( -17.40)
>DroPse_CAF1 23376 94 + 1
AGAGCAAAAGAAAUA---GAAUGAAAGCAAUUAAUAAAAUGGCAACUUUGUGGAAAAUUAAUUGUACAUUAUGCAAAAGGCUUGCUAAUGGCAGGAU
...((..........---........(((((((((....(.(((....))).)...))))))))).(((((.((((.....)))))))))))..... ( -16.10)
>DroEre_CAF1 28903 89 + 1
-------AAGAAAUAAACGAACGAAAGCAAUUAAUAAAAUAACAAGUUUGUGCAAAAUUAAUUGUGUAUUAUGCAA-AGGCUUGCUAAUGGCAGGAU
-------...................(((((((((......(((....))).....)))))))))...........-...(((((.....))))).. ( -12.60)
>DroYak_CAF1 20369 90 + 1
-------AAGAAAUAAACGAAUGAAAGCAAUUAAUAAAAUAACAAGUUUGUGCAAAAUUAAUUGUGUAUUAUGCAAAAGGCUUGCUAAUGGCAGGAU
-------............((((...(((((((((......(((....))).....))))))))).))))..........(((((.....))))).. ( -13.80)
>DroAna_CAF1 17675 90 + 1
-------AAAAAAAAACCGAAUGGAAGCAAUUAAUAAAAUAACAACUAUGUGCAAAAUUAAUUGUGUAUUAUGCAAAAGGCUUGCUAAUGGCAGGAU
-------.........((..((((..(((((((((......(((....))).....)))))))))...))))......))(((((.....))))).. ( -13.50)
>DroPer_CAF1 19878 94 + 1
AGAGCAAAAGAAAUA---GAAUGAAAGCAAUUAAUAAAAUGGCAACUUUGUGGAAAAUUAAUUGUACAUUAUGCAAAAGGCUUGCUAAUGGCAGGAU
...((..........---........(((((((((....(.(((....))).)...))))))))).(((((.((((.....)))))))))))..... ( -16.10)
>consensus
_______AAGAAAUAA_CGAAUGAAAGCAAUUAAUAAAAUAACAACUUUGUGCAAAAUUAAUUGUGUAUUAUGCAAAAGGCUUGCUAAUGGCAGGAU
...................((((...(((((((((......(((....))).....))))))))).))))..........(((((.....))))).. (-13.14 = -12.87 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:44 2006