| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 789,128 – 789,226 |
| Length | 98 |
| Max. P | 0.960088 |
| Location | 789,128 – 789,226 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.28 |
| Mean single sequence MFE | -40.42 |
| Consensus MFE | -20.12 |
| Energy contribution | -21.35 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 789128 98 + 27905053 GUAGAUGCAGAACAGCAGUCCCUACCAG-UUUGUCA-GCUCCACUGGGCUGCGUGUGGAGAUUCGCAGCCAAGG------UCAAGGUGGAUUGAUGACUGGGUCAA ...(((((......))........((((-.(..(((-(.((((((.(((((((.((....)).)))))))....------....))))))))))..)))))))).. ( -36.10) >DroPse_CAF1 13788 87 + 1 -----UUCG---GCGAAGGCCCCACUGUGCGGCCCAUGAGCCACUGCUUCACUUG----GACUCGC-UUCAAGG------UCAAGGUGGUUCGGUUAUUGGGUCAG -----...(---((....))).........(((((((((((((((......((((----((.....-)))))).------....))))))))).....)))))).. ( -33.50) >DroSec_CAF1 13201 98 + 1 GUAGAUGCAGAACAGCAGACCCCACCAG-UUUGCCA-GCUCCACUGGACUGCGUGUGGAGAUUCGCACCCAAGG------UGAAGGUGGAUUGGUGACUGGGUCAA .....(((......)))(((((((((((-((..((.-.((((((..........)))))).(((((.......)------))))))..))))))))...))))).. ( -41.80) >DroSim_CAF1 13690 98 + 1 GUAGAUGCAGAACAGCAGACCCCACCAG-UUUGCCA-GCUCCACUGGGCUGCGUGUGGAGAUUCGCACCCAAGG------UCAAGGUGGAUUGGUGACUGGGUCAA .....(((......)))(((((((((((-((..((.-...((..((((.((((.((....)).)))))))).))------....))..))))))))...))))).. ( -41.40) >DroEre_CAF1 12563 104 + 1 GUAGAUCCAGCACAGCAGACCCCACCAG-CUGCCCA-GCUCCACUGGGCUGCGUGUGGAGAUUCGCACUCAAGGUCAAGGUCAAGGUGGAGUGGUGACUGGGUCAC ...((((((((((.....((.(((((.(-(.(((((-(.....)))))).))((((((....))))))................))))).)).))).))))))).. ( -45.60) >DroYak_CAF1 14073 99 + 1 GUAGAUCCAGAACAGCAGACCCCACCACUUUGCCCA-GCUCCACUGGUUUGCGUGUGGAGACUCGGCCUCAAGG------UCAAGGUGGAGUGGUGACUGGGUCAA ...(((((((..(....)....((((((((..((.(-(((((((..........)))))).)).((((....))------))..))..)))))))).))))))).. ( -44.10) >consensus GUAGAUGCAGAACAGCAGACCCCACCAG_UUGCCCA_GCUCCACUGGGCUGCGUGUGGAGAUUCGCACCCAAGG______UCAAGGUGGAUUGGUGACUGGGUCAA .................(((((((((((.((..((...((((((..........))))))...(........)...........))..))))))))...))))).. (-20.12 = -21.35 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:55 2006