Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,325,149 – 4,325,245 |
Length | 96 |
Max. P | 0.685180 |
Location | 4,325,149 – 4,325,245 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.56 |
Mean single sequence MFE | -31.37 |
Consensus MFE | -14.36 |
Energy contribution | -15.42 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.07 |
Mean z-score | -2.26 |
Structure conservation index | 0.46 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4325149 96 - 27905053 UACCGAAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUACAGAAUUUACUGCCAU-----ACUGGCAGAGGCAUUGCAACUGCUGUUGGUAGC------AGCA ..............---------....(((((.....((((....)))).............((((..-----...))))))))).........(((((.....))------))). ( -27.10) >DroPse_CAF1 4030 95 - 1 GGUC-AGGGCGCAAUCCCUUCUGUAAAGCCUGAAAUUAGCAAGAGCUCUUUGCGGAAUUUACUGCCGG------------GAGGAGCUGCAGCUGCAGCUGC-AGC------AUC- ..((-(((..(((........)))....))))).....((...((((((((.(((.........))).------------))))))))(((((....)))))-.))------...- ( -33.80) >DroSec_CAF1 12526 100 - 1 UACC-AAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACUGCCAUACUAUACUGGCAGAGGCACUGGAACUGCUGUUGCUAGC------AGCA ..((-(..((....---------((((..((((((...((....))..)))).))..))))((((((........)))))).))...)))....(((((.....))------))). ( -28.70) >DroSim_CAF1 1501 100 - 1 UACC-AAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACAGCCAUACUAUACUGGCAGAGGCAUUGGAACUGCUGUUGCUAGC------AGCA ..((-(((......---------....(((((.....((((....))))..............((((........)))).))))))))))....(((((.....))------))). ( -28.80) >DroEre_CAF1 12570 96 - 1 UACC-AAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACUGCCAUG-------GGCAGAGGCAUUGGAACUGCUGUUGGUAGCAG---CAGCA ..((-(((......---------....(((((......((....))((((.((((......))))...)-------))).))))))))))....(((((((....)))---)))). ( -35.40) >DroYak_CAF1 4017 99 - 1 UACC-AAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACUGCCAUG-------GUCAGUGGCAUUGGAACUGCUGUUGGUAGCAGCAGCAGCA ....-..(((((..---------((((..((((((...((....))..)))).))..)))).((((((.-------....))))))))))).(((((((((....))))))))).. ( -34.40) >consensus UACC_AAUCCGAAA_________UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACUGCCAU________GGCAGAGGCAUUGGAACUGCUGUUGCUAGC______AGCA ...........................(((((......((....)).....((((......))))...............))))).........((((....)))).......... (-14.36 = -15.42 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:36 2006