Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,324,429 – 4,324,546 |
Length | 117 |
Max. P | 0.770046 |
Location | 4,324,429 – 4,324,546 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.25 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -29.00 |
Energy contribution | -29.52 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.81 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4324429 117 - 27905053 UUUGGUGGCCUCGUUUGUUUUGCUUUGGAGGCUGCCACCAGGUCAGUGUUCCAGCAGUUGUUAGCUCUGCUGCAUUUU---CCCAGAUGCUGACGAGAUGGGUCAUAAAAAAAAUGUUUU ....((((((.(((((...(((((..(((.((((((....)).)))).))).))))).(((((((((((.........---..)))).)))))))))))))))))).............. ( -36.70) >DroSec_CAF1 11816 108 - 1 UUUGGUGGCCUCGUUUGUUUUGCUUUGGAGGCUGCCACCAGGUCAGUGUUCCAGCAG---------CUGCUGCAUUUU---CCCAGAUGUUGACGAGAUGGGUCAUAAAAAAAAUGUUUU ....(((((((..((((((..(((((((..((((((....)).))))....((((..---------..))))......---.))))).)).))))))..))))))).............. ( -30.90) >DroSim_CAF1 781 116 - 1 UUUGGUGGCCUCGUUUGUUUUGCUUUGGAGGCUGCCACCAGGUCAGUGUUCCGACAGUUGUUAGCUCUGCUGCAUUUU---CCCAGAUGCUGACGAGAUGGGUCAUAAAA-AAAUGUUUU ....((((((.(((((.....(((((((((((((((....)).)))).)))))).)))(((((((((((.........---..)))).))))))))))))))))))....-......... ( -35.20) >DroEre_CAF1 11854 114 - 1 UUUGCUGGCCUCGUUUGUUUUGCUUUGGGUGCUGCCACCAGGUCAGUGUUCCUGCAGUUGUUAACUCUGCUGCAUUUG---CCCAGAUACUGACGAGAUGGGCCAUAA---AAAUGUUUU ((((.((((((..((((((....(((((((((((((....)).)))).....((((((.(......).))))))...)---))))))....))))))..)))))))))---)........ ( -38.70) >DroYak_CAF1 3269 119 - 1 UUUGGUGGCCUCGUUUGUUUUGCUUUGGGGGCUGCCACCAGGUCAGUGUUCCAGCAGUUGUUAACUCUGCUGCAUUUGCUGCCGAGAUACUGACGAGAUGGGUCAUAAAA-AAAUGUUUU ..(((..(((((....(.....)....)))))..)))(((.((((((((..(.((((((((..........)))...))))).)..))))))))....))).........-......... ( -38.40) >consensus UUUGGUGGCCUCGUUUGUUUUGCUUUGGAGGCUGCCACCAGGUCAGUGUUCCAGCAGUUGUUAACUCUGCUGCAUUUU___CCCAGAUGCUGACGAGAUGGGUCAUAAAA_AAAUGUUUU ....(((((((..((((((....(((((..((((((....)).))))....((((((.........))))))..........)))))....))))))..))))))).............. (-29.00 = -29.52 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:35 2006