Locus 1512

Sequence ID 3R_DroMel_CAF1
Location 4,323,711 – 4,323,827
Length 116
Max. P 0.852491
window2517

overview

Window 7

Location 4,323,711 – 4,323,827
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.76
Mean single sequence MFE -37.40
Consensus MFE -22.04
Energy contribution -23.08
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -2.83
Structure conservation index 0.59
SVM decision value 0.79
SVM RNA-class probability 0.852491
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4323711 116 - 27905053
AGCUGCUUGUGGCACUUCGUUAGCCGCUUUUGUGCUGCAUCUCCAUCAGGUGCAGGAGCGAAUUGCGAGGAAUACCAUUUUGUGUUCUUUU-UUUAAUG---AAGGGCAUUGCAACUGAA
((.(((..(((.(.(((((((((.(((.(((((.((((((((.....))))))))..)))))..)))((((((((......))))))))..-.))))))---)))).))).))).))... ( -41.30)
>DroPse_CAF1 2356 105 - 1
AGCUGCUUGUGGCACUUCGUUAGCCGCUUUUGUGUUGCAA--GCUGCAGGUGCACCA-CAAAUAAAAAAAAAAAGAAAA---------GGUUUUUAAUG---AAGUGCAUUGCAAGUGAG
....((((((.((((((((((((((.((((((((.((((.--.(....).)))).))-))...........))))....---------)))...)))))---))))))...))))))... ( -32.10)
>DroSec_CAF1 11085 116 - 1
AGCUGCUUGUGGCACUUCGUUAGCCGCUUUUGUGCUGCAUCUCCAUCAGGUGCAGGAGCGAAUUGCGAGGAAUACCAUUUUAUUUUCUUUU-UUUAAUG---AAGGGCAUUGCAACUGAA
((.(((..(((.(.(((((((((.(((.(((((.((((((((.....))))))))..)))))..))).((....))...............-.))))))---)))).))).))).))... ( -36.00)
>DroSim_CAF1 67 120 - 1
AGCUGCUUGUGGCACUUCGUUAGCCGCUUUUGUGCUGCAUCUCCAUCAGGUGCAGGAGCGAAUUGCGAGGAAUACCAUUUUAUUUUCUUUUUUUUAAUGAAGAAGGGCAUUGCAACUGAA
((.(((..(((.(.(((((((((.(((.(((((.((((((((.....))))))))..)))))..))).((....)).................)))))))))...).))).))).))... ( -34.90)
>DroYak_CAF1 2518 117 - 1
AGCUGCUUGUGGCACUUCGUUAGCCGCUUUUGUGCUGCAUCUCCAUCAGGUGCAGCAGCGAAUUGCGAGGAAUACAAUUUCCUUUUUUUUUUUUUAAUG---AAGGGCAUUGCAACUGAA
((.(((..(((.(.(((((((((.(((.((((((((((((((.....)))))))))).))))..)))(((((......)))))..........))))))---)))).))).))).))... ( -42.70)
>consensus
AGCUGCUUGUGGCACUUCGUUAGCCGCUUUUGUGCUGCAUCUCCAUCAGGUGCAGGAGCGAAUUGCGAGGAAUACCAUUUUAUUUUCUUUUUUUUAAUG___AAGGGCAUUGCAACUGAA
.((((((((((((.........))))).(((((.((((((((.....))))))))..)))))..........................................)))))..))....... (-22.04 = -23.08 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:32 2006