Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,322,160 – 4,322,280 |
Length | 120 |
Max. P | 0.741693 |
Location | 4,322,160 – 4,322,280 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -22.50 |
Consensus MFE | -17.80 |
Energy contribution | -17.76 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.63 |
Structure conservation index | 0.79 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4322160 120 - 27905053 CUGCCUUCACUUUCCGACCCGUUCCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGAA ......(((((....((.....)).....(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............)))))))))). ( -20.60) >DroPse_CAF1 213 111 - 1 ------UCGCUGGUGGUUG---CCCCUUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCACGCUCGACAGUUUUCUUCGCUUUUUGCGCAGUGGA ------.(((.((.((...---))))...)))....((((((((((..(((.((((((.....))))))...........((((......).)))........)))...)).)))))))) ( -28.50) >DroSec_CAF1 9515 120 - 1 CUCCCUUCACUUUCCGUCCCGUUCCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGAA ......(((((...((...))........(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............)))))))))). ( -20.10) >DroEre_CAF1 9520 120 - 1 CUGCCUCCACUUUUCGCCCCGUUCCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGAA .........................(((.(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............))))).))).. ( -19.70) >DroYak_CAF1 926 120 - 1 CUGCCUCCACUUUACGUCCCGUUGCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGGA .....((((((..(((...))).......(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............))))))))))) ( -23.60) >consensus CUGCCUUCACUUUCCGUCCCGUUCCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGAA ......(((((....(........)....(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............)))))))))). (-17.80 = -17.76 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:31 2006