Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,321,139 – 4,321,326 |
Length | 187 |
Max. P | 0.831383 |
Location | 4,321,139 – 4,321,246 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.14 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -33.47 |
Energy contribution | -33.03 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.20 |
Structure conservation index | 0.85 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4321139 107 - 27905053 AGGGGCAAUAAAAGGCGCCAGUUAGCUAAGUGCUGGCUGCAUUGUGCCAAAGUGCGUUCACAGAUGAGUGGCCAACUGGUUAAGAGCACCGG-------------CAAAAGCAGAUUUUC .((.((........)).))((((.(((...((((((.(((.((..((((...((.((.(((......)))))))..))))...)))))))))-------------))..))).))))... ( -32.50) >DroSec_CAF1 8505 120 - 1 AGGGGCAAUAAAAGGCGCCAGUUAGCUAAGUGCUGGCUGCAUUGUGCCAAAGUGCGUUCACAGAUGAGUGGCCAACUGGUUAAGAGCACCGGCGGAAAGCCGAAGCAAAAGCAGAUUUUC ....((.......(((((((((((((.....))))))))....)))))....(((((((...(((.(((.....))).)))..))))..((((.....))))..)))...))........ ( -39.50) >DroEre_CAF1 8508 119 - 1 AGGGGCAAUAAAAGGCGCCAGUUAGCUAAGUGCUGGCUGCAUUGUGCCAAAGUGCGUUCACAGAUGAGUGGCCAGCUGGCCAAGAGCACUGGCC-AAGGCAGAAGCAAAAGCAGAUUUUU .((.((........)).))((((.(((...((((..((((.(((.((((..((((.((((....))))(((((....)))))...)))))))))-)).)))).))))..))).))))... ( -45.70) >consensus AGGGGCAAUAAAAGGCGCCAGUUAGCUAAGUGCUGGCUGCAUUGUGCCAAAGUGCGUUCACAGAUGAGUGGCCAACUGGUUAAGAGCACCGGC__AA_GC_GAAGCAAAAGCAGAUUUUC ....((.......(((((((((((((.....))))))))....)))))...((((.((((....))))(((((....)))))...)))).....................))........ (-33.47 = -33.03 + -0.44)
Location | 4,321,166 – 4,321,286 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -31.30 |
Energy contribution | -31.64 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.96 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4321166 120 + 27905053 ACCAGUUGGCCACUCAUCUGUGAACGCACUUUGGCACAAUGCAGCCAGCACUUAGCUAACUGGCGCCUUUUAUUGCCCCUUUUCCUCAUUCAUUGCUGGCCGGCAACAAAACGGUUUAAU .((((((((((((......)))...((....((((........)))))).....))))))))).(((((((.(((((((..................))..))))).)))).)))..... ( -32.77) >DroSec_CAF1 8545 120 + 1 ACCAGUUGGCCACUCAUCUGUGAACGCACUUUGGCACAAUGCAGCCAGCACUUAGCUAACUGGCGCCUUUUAUUGCCCCUUUUCCUCAUUCAUUGCUGGCCGGCAACAAAACGGUUUAAU .((((((((((((......)))...((....((((........)))))).....))))))))).(((((((.(((((((..................))..))))).)))).)))..... ( -32.77) >DroEre_CAF1 8547 120 + 1 GCCAGCUGGCCACUCAUCUGUGAACGCACUUUGGCACAAUGCAGCCAGCACUUAGCUAACUGGCGCCUUUUAUUGCCCCUUUUCCUCAUUCAUUGCUGGCCGGCAACAAAACGGUUUAAU (((((.(((((((......)))...((....((((........)))))).....)))).)))))(((((((.(((((((..................))..))))).)))).)))..... ( -32.77) >consensus ACCAGUUGGCCACUCAUCUGUGAACGCACUUUGGCACAAUGCAGCCAGCACUUAGCUAACUGGCGCCUUUUAUUGCCCCUUUUCCUCAUUCAUUGCUGGCCGGCAACAAAACGGUUUAAU .((((((((((((......)))...((....((((........)))))).....))))))))).(((((((.(((((((..................))..))))).)))).)))..... (-31.30 = -31.64 + 0.33)
Location | 4,321,206 – 4,321,326 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -37.57 |
Consensus MFE | -37.72 |
Energy contribution | -37.50 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.45 |
Structure conservation index | 1.00 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4321206 120 - 27905053 GAACUGUUCCAGUGGCAGCUUCAUCGGAGCAGGAAACUAAAUUAAACCGUUUUGUUGCCGGCCAGCAAUGAAUGAGGAAAAGGGGCAAUAAAAGGCGCCAGUUAGCUAAGUGCUGGCUGC ...(((((((.((((.....)))).)))))))..............((..((..((((......))))..))...))....((.((........)).))(((((((.....))))))).. ( -37.00) >DroSec_CAF1 8585 120 - 1 GAGCUGUUCCAGUGGCAGCUUCAUCGGAGCAGGAAACUAAAUUAAACCGUUUUGUUGCCGGCCAGCAAUGAAUGAGGAAAAGGGGCAAUAAAAGGCGCCAGUUAGCUAAGUGCUGGCUGC ...(((((((.((((.....)))).)))))))..............((..((..((((......))))..))...))....((.((........)).))(((((((.....))))))).. ( -36.70) >DroEre_CAF1 8587 120 - 1 GAGCUGUUCCAGUGGCAGCUCCAUCGGAGCAGGAAACUAAAUUAAACCGUUUUGUUGCCGGCCAGCAAUGAAUGAGGAAAAGGGGCAAUAAAAGGCGCCAGUUAGCUAAGUGCUGGCUGC ..((((..((.(..((((((((...)))))((....))..............)))..).)).))))...............((.((........)).))(((((((.....))))))).. ( -39.00) >consensus GAGCUGUUCCAGUGGCAGCUUCAUCGGAGCAGGAAACUAAAUUAAACCGUUUUGUUGCCGGCCAGCAAUGAAUGAGGAAAAGGGGCAAUAAAAGGCGCCAGUUAGCUAAGUGCUGGCUGC ...(((((((.((((.....)))).)))))))..............((..((..((((......))))..))...))....((.((........)).))(((((((.....))))))).. (-37.72 = -37.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:30 2006