Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,320,979 – 4,321,099 |
Length | 120 |
Max. P | 0.654715 |
Location | 4,320,979 – 4,321,099 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -30.20 |
Energy contribution | -30.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.99 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4320979 120 - 27905053 ACACUUUCCCGCCUCUUAGCGGGCAAUCAAUUCAUACGGAUGUUGCCCCGGCGAAAAACCAAUUAAAUUUUAUAAGCCCUACAACUUGCAUAGAACGAUUUCGCCUGCCCCAGGGGUGCA .........(((((((..(((((((((..((((....))))))))))).(((((((......(((.......)))((..........)).........))))))).))...))))))).. ( -30.20) >DroSec_CAF1 8345 120 - 1 ACACUUUGCCGCCUCUUAGCGGGCAAUCAAUUCAUACGGAUGUUGCCCCGGCGAAAAACCAAUUAAAUUUUAUAAGCCCUACAACUUGCAUAGAACGAUUUCGCCUGCCCCAGGGGUGCA ......(((.((((((..(((((((((..((((....))))))))))).(((((((......(((.......)))((..........)).........))))))).))...))))))))) ( -30.90) >DroEre_CAF1 8350 120 - 1 ACACUUUCCCGCCUCUUAGCGGGCAAUCAAUUCAUACGGAUGUUGCCCCGGCGAAAAACCAAUUAAAUUUUAUAAGCCCUACAACUUGCAUAGAACCAUUUCGCCUGCCCCAGGGGUGCA .........(((((((..(((((((((..((((....))))))))))).(((((((......(((.......)))((..........)).........))))))).))...))))))).. ( -30.20) >consensus ACACUUUCCCGCCUCUUAGCGGGCAAUCAAUUCAUACGGAUGUUGCCCCGGCGAAAAACCAAUUAAAUUUUAUAAGCCCUACAACUUGCAUAGAACGAUUUCGCCUGCCCCAGGGGUGCA .........(((((((..(((((((((..((((....))))))))))).(((((((......(((.......)))((..........)).........))))))).))...))))))).. (-30.20 = -30.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:27 2006