Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,320,481 – 4,320,593 |
Length | 112 |
Max. P | 0.977465 |
Location | 4,320,481 – 4,320,593 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.66 |
Mean single sequence MFE | -37.67 |
Consensus MFE | -29.73 |
Energy contribution | -30.40 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.20 |
Structure conservation index | 0.79 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4320481 112 + 27905053 GCUUUCGGUGGCCGAGAAAGUAUUUACAACAUAUGCAAGUUGGACGUACAACGGGGCGUAUGAUGAAUCCAUAAGGCC--------AUAGGGCCAGGAAAAACCAGUGGGGGAGGGGGAG .((..((.(((...............((.(((((((..((((......))))...))))))).))..(((....((((--------....)))).)))....))).))..))........ ( -34.60) >DroSec_CAF1 7850 111 + 1 GCUUUCGGUCGCCCAGAAAGUAUUUACAACAUAUGCAAGUUGGACGUACAACGGGGCGUAUGAUGAAUACACAAGGCC--------AUAGGGCCAGGAA-AACCAGGGGGGAGGGGGGAG .((..(..((.(((.....(((((((...(((((((..((((......))))...))))))).)))))))....((((--------....)))).((..-..)).))).))..)..)).. ( -40.60) >DroEre_CAF1 7855 109 + 1 GCUUUCGGUGGCCCAGAAAGUAUUUACAACAUAUGCAAGUUGGACGUACAACGGGGCGUAUGAUGAAUACAUAAGGCCAUAAGGCCAUAAGGCCAGGAAAAACCAGGGG----------- .(((..(((((((......(((((((...(((((((..((((......))))...))))))).)))))))....))))....((((....)))).......)))..)))----------- ( -37.80) >consensus GCUUUCGGUGGCCCAGAAAGUAUUUACAACAUAUGCAAGUUGGACGUACAACGGGGCGUAUGAUGAAUACAUAAGGCC________AUAGGGCCAGGAAAAACCAGGGGGG__GGGGGAG .((..((((..((......(((((((...(((((((..((((......))))...))))))).)))))))....((((............)))).))....))).)..)).......... (-29.73 = -30.40 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:26 2006