Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,319,328 – 4,319,441 |
Length | 113 |
Max. P | 0.826711 |
Location | 4,319,328 – 4,319,441 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -38.53 |
Consensus MFE | -26.09 |
Energy contribution | -27.10 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.11 |
Mean z-score | -1.99 |
Structure conservation index | 0.68 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4319328 113 - 27905053 GAUUUCGGGGGGGGGGGGGGGGUUUUGAAACGAGGGACUGGGGAAUGGGUUAUGUGGCCUGGAGCCU-------GCGGUUCCUCAGGCGGUUUGCUAACGAAAUGUCCCUUUGAAACGUU .............(((((((.((((((....((((((((((((..((((((....))))))...)))-------.))))))))).(((.....)))..)))))).)))))))........ ( -40.20) >DroSec_CAF1 6684 102 - 1 GAUUUG-----------UGGGGACAUAAAACGGGGGACUGGGGAAUGGGUUAUGUGGCCUGGAGCCG-------CAGGUACCUCAGGCGGUUUGCUAACGAAAUGUUCCUUUGAAACGUU ..((((-----------((....)))))).(((....)))(((((((..((...((((...((((((-------(..(.....)..)))))))))))..))..))))))).......... ( -32.90) >DroEre_CAF1 6709 106 - 1 GAUUU--------------GGGACAUAAAACGGGGGACUGGGGAAUGGGUUAUGUGGCCUGGAACCGGGAGCUCCCGGUUCCUCAGGCGGUUUGCUAACGAAAUGUCCCUUUGAAACGUU .....--------------(((((((....(((....))).......(((....(.(((((((((((((....)))))))))..)))).)...)))......)))))))........... ( -42.50) >consensus GAUUU_____________GGGGACAUAAAACGGGGGACUGGGGAAUGGGUUAUGUGGCCUGGAGCCG_______CCGGUUCCUCAGGCGGUUUGCUAACGAAAUGUCCCUUUGAAACGUU ...................(((((((.....((((((((((((..((((((....))))))...))........)))))))))).(((.....)))......)))))))........... (-26.09 = -27.10 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:20 2006