Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,318,563 – 4,318,683 |
Length | 120 |
Max. P | 0.786679 |
Location | 4,318,563 – 4,318,683 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -24.96 |
Energy contribution | -24.63 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.10 |
Mean z-score | -1.74 |
Structure conservation index | 0.94 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4318563 120 + 27905053 UAAAUUAAAAUUAACAUUUGGUCACCCCGAGUGGGCCCGUCUGUCCGGCAGUUCUCCGGAUACAAUACACAUACUACGUAUGUAUAUGUGUCAGCCAUCAUGUGAAUUAGUAAAAUUAAA ...(((((......(((((((.....)))))))(((.....(((((((.......)))))))....(((((((.(((....))))))))))..)))..........)))))......... ( -28.40) >DroSec_CAF1 5947 112 + 1 UAAAUUAAAAUUAACAUUUGGUCACCCCGAAUGGGCCCGUCUGUCCGGCAGUUCUCCGGAUACAAUACACAUACU--------AUAUGUGUGAGCCAUCAUGUGAAUUAGUAAAAUUAAA ...(((((......(((((((.....)))))))(((.....(((((((.......)))))))...((((((((..--------.)))))))).)))..........)))))......... ( -27.70) >DroEre_CAF1 5948 112 + 1 UAAAUUAAAAUUAACAUUUGGUCACCCCGAAUGGGCCCGCCUGUCCGGCAGUUCUCCGAACACUAAACGCAUACU--------AUAUGUGUGAGCCAUCAUGUGAAUUAGUAAAAUUAAA ...(((((......(((((((.....)))))))(((.((((.....))).((((...)))).....(((((((..--------.)))))))).)))..........)))))......... ( -23.90) >consensus UAAAUUAAAAUUAACAUUUGGUCACCCCGAAUGGGCCCGUCUGUCCGGCAGUUCUCCGGAUACAAUACACAUACU________AUAUGUGUGAGCCAUCAUGUGAAUUAGUAAAAUUAAA ...(((((......(((((((.....)))))))(((.....(((((((.......)))))))....(((((((...........)))))))..)))..........)))))......... (-24.96 = -24.63 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:19 2006