Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,317,336 – 4,317,496 |
Length | 160 |
Max. P | 0.782490 |
Location | 4,317,336 – 4,317,456 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -32.03 |
Consensus MFE | -27.22 |
Energy contribution | -27.67 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.11 |
Structure conservation index | 0.85 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4317336 120 + 27905053 CGUUAAAAUGGCAUUUACAGCGCGGCUCUCGAUGCUGCCAUUUUGCCCCGCUGGCAGAGCGCAAUAAAUUUUCCAUGGAAAAUUUCGUACAUUUGAUUUUCACCAGCUUUAACGACAUUU (((((((.(((........(((((((..........)))..((((((.....))))))))))...((((((((....)))))))).................)))..)))))))...... ( -33.40) >DroSec_CAF1 4706 120 + 1 CGUUAAAAUGGCAUUUACAGCGCGGCUCUCGAUGCUGCCAUUUUGCACCGCUGGCGGAGCGCAAUAAAUUUUCCAUGGAAAAUUUCGUACAUUUGAUUUUCACCAGCUUUAACGACAUUU (((((((...(((......(.(((((.......))))))....)))...(((((.((((..(((.((((((((....)))))))).......)))..)))).))))))))))))...... ( -32.20) >DroEre_CAF1 4714 120 + 1 CGUUAAAAUGGCAUUUACAGCUCGGCUCUCGAUGCUGCCAUUUUGCACCGCUGGCGUAGCGCUAUAAAUUUUCCAUGGAAAAUUUCGUACAUUUGAUUUUCACCAGCUUUAACGACAUUU (((((((...(((....(((((((.....))).))))......)))...(((((.(((.((....((((((((....)))))))))))))...((.....))))))))))))))...... ( -30.50) >consensus CGUUAAAAUGGCAUUUACAGCGCGGCUCUCGAUGCUGCCAUUUUGCACCGCUGGCGGAGCGCAAUAAAUUUUCCAUGGAAAAUUUCGUACAUUUGAUUUUCACCAGCUUUAACGACAUUU (((((((.(((........(((((((..........)))..(((((.......)))))))))...((((((((....)))))))).................)))..)))))))...... (-27.22 = -27.67 + 0.45)
Location | 4,317,336 – 4,317,456 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -30.87 |
Energy contribution | -31.20 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.25 |
Structure conservation index | 0.89 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4317336 120 - 27905053 AAAUGUCGUUAAAGCUGGUGAAAAUCAAAUGUACGAAAUUUUCCAUGGAAAAUUUAUUGCGCUCUGCCAGCGGGGCAAAAUGGCAGCAUCGAGAGCCGCGCUGUAAAUGCCAUUUUAACG ......((((((((((((((.....)....(((..((((((((....))))))))..))).....))))))..((((.....(((((..((.....)).)))))...))))..))))))) ( -35.10) >DroSec_CAF1 4706 120 - 1 AAAUGUCGUUAAAGCUGGUGAAAAUCAAAUGUACGAAAUUUUCCAUGGAAAAUUUAUUGCGCUCCGCCAGCGGUGCAAAAUGGCAGCAUCGAGAGCCGCGCUGUAAAUGCCAUUUUAACG ......((((((((.((((...........(((..((((((((....))))))))..)))((.(((....))).))......(((((..((.....)).)))))....)))))))))))) ( -33.30) >DroEre_CAF1 4714 120 - 1 AAAUGUCGUUAAAGCUGGUGAAAAUCAAAUGUACGAAAUUUUCCAUGGAAAAUUUAUAGCGCUACGCCAGCGGUGCAAAAUGGCAGCAUCGAGAGCCGAGCUGUAAAUGCCAUUUUAACG ......((((((((.((((..........(((((.((((((((....))))))))....((((.....))))))))).....(((((.(((.....))))))))....)))))))))))) ( -35.80) >consensus AAAUGUCGUUAAAGCUGGUGAAAAUCAAAUGUACGAAAUUUUCCAUGGAAAAUUUAUUGCGCUCCGCCAGCGGUGCAAAAUGGCAGCAUCGAGAGCCGCGCUGUAAAUGCCAUUUUAACG ......((((((((.((((..........(((((.((((((((....))))))))....((((.....))))))))).....(((((..(....)....)))))....)))))))))))) (-30.87 = -31.20 + 0.33)
Location | 4,317,376 – 4,317,496 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -24.13 |
Energy contribution | -24.13 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.90 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4317376 120 + 27905053 UUUUGCCCCGCUGGCAGAGCGCAAUAAAUUUUCCAUGGAAAAUUUCGUACAUUUGAUUUUCACCAGCUUUAACGACAUUUUAAUGUGCGUGGAAAACACAAACAGGAAAACAACUUUCCA .((((((.....))))))(((((...(((((((....)))))))((((....(((........))).....))))........)))))(((.....))).....(((((.....))))). ( -26.90) >DroSec_CAF1 4746 120 + 1 UUUUGCACCGCUGGCGGAGCGCAAUAAAUUUUCCAUGGAAAAUUUCGUACAUUUGAUUUUCACCAGCUUUAACGACAUUUUAAUGUGCGUGGAAAACACAAACAGGAAAACAACUUUCCA ....((((.(((((.((((..(((.((((((((....)))))))).......)))..)))).))))).((((.......)))).))))(((.....))).....(((((.....))))). ( -27.80) >DroEre_CAF1 4754 120 + 1 UUUUGCACCGCUGGCGUAGCGCUAUAAAUUUUCCAUGGAAAAUUUCGUACAUUUGAUUUUCACCAGCUUUAACGACAUUUUAAUGUGCGUGGAAAACACAAACAGGAAAACAACUUUCCA ....((((.(((((.(((.((....((((((((....)))))))))))))...((.....))))))).((((.......)))).))))(((.....))).....(((((.....))))). ( -25.70) >consensus UUUUGCACCGCUGGCGGAGCGCAAUAAAUUUUCCAUGGAAAAUUUCGUACAUUUGAUUUUCACCAGCUUUAACGACAUUUUAAUGUGCGUGGAAAACACAAACAGGAAAACAACUUUCCA .......(((((((....(((....((((((((....))))))))))).....((.....)))))))....(((((((....)))).)))))............(((((.....))))). (-24.13 = -24.13 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:14 2006