Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,315,698 – 4,315,818 |
Length | 120 |
Max. P | 0.742018 |
Location | 4,315,698 – 4,315,818 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -34.23 |
Consensus MFE | -34.20 |
Energy contribution | -34.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 1.00 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4315698 120 - 27905053 CUGACCCACUCACAUUGCACACUGUCCUAUGCCAAAAACGCAAAAUCGCUUUGCGCCUGAAAGUAUGCAGCAAAGCGUGAAGCAUGCAAAAGGGCGGCAUACCGAUUGGUGUUUCAAUCC .............((((.((((((((.((((((......(((((.....)))))((((....((((((..((.....))..))))))....))))))))))..)).))))))..)))).. ( -34.20) >DroSec_CAF1 3098 120 - 1 CUGACCCACUCGCAUUGCACACUGUCCUAUGCCAAAAACGCAAAAUCGCUUUGCGCCUGAAAGUAUGCAGCAAAGCGUGAAGCAUGCAAAAGGGCGGCAUACCGAUUGGUGUUUCAAUCC ..((((((.((((...)).........((((((......(((((.....)))))((((....((((((..((.....))..))))))....))))))))))..)).))).)))....... ( -34.30) >DroEre_CAF1 3108 120 - 1 CUGACCCACUCACAUUGCACACUGUCCUAUGCCAAAAACGCAAAAUCGCUUUGCGCCUGAAAGUAUGCAGCAAAGCGUGAAGCAUGCAAAAGGGCGGCAUACCGAUUGGUGUUUCAAUCC .............((((.((((((((.((((((......(((((.....)))))((((....((((((..((.....))..))))))....))))))))))..)).))))))..)))).. ( -34.20) >consensus CUGACCCACUCACAUUGCACACUGUCCUAUGCCAAAAACGCAAAAUCGCUUUGCGCCUGAAAGUAUGCAGCAAAGCGUGAAGCAUGCAAAAGGGCGGCAUACCGAUUGGUGUUUCAAUCC .............((((.((((((((.((((((......(((((.....)))))((((....((((((..((.....))..))))))....))))))))))..)).))))))..)))).. (-34.20 = -34.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:03 2006