Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,314,021 – 4,314,141 |
Length | 120 |
Max. P | 0.836848 |
Location | 4,314,021 – 4,314,141 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -35.17 |
Consensus MFE | -33.44 |
Energy contribution | -33.00 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.03 |
Structure conservation index | 0.95 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.836848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4314021 120 - 27905053 ACCGACAGCAAUUUGCCAGAGUACGUCUUGUGCUUGCUGCUUGAGUGAAUUUAAAUUUACUCAGCCAGUGUUUUUCGCCCUUCAAUGGCAAUGCAAUGAGCUGGAGAAACUCCUUCCAUU .......(((..((((((((((((.....))))))((((.((((((((((....)))))))))).))))................)))))))))((((.(..((((...))))..))))) ( -36.10) >DroSec_CAF1 1456 120 - 1 ACCGACAGCAAUUUGCCAGAGUACGUCUUGCGCUUGCUGCUUGAGUGGAUUUAAAUUUACUCAGCCAGUGUUUUUCGCCCUUCAAUGGCAAUGCAAUGAGCUGGAGAAACUCCUUCCAUU .......(((..(((((((((..((....(((((.(((....((((((((....))))))))))).)))))....))..)))...)))))))))((((.(..((((...))))..))))) ( -34.70) >DroEre_CAF1 1432 120 - 1 ACCGACAGCAAUUUGCCAGAGUACGUCUUGCGCUUGCUGCUUGAGUGGAUUUAAAUUUACUCAGCCAGUGUUUUUCGCCCUUCAAUGGCAAUGCAAUGAGCUGGAGAAACUCCUUCCAUU .......(((..(((((((((..((....(((((.(((....((((((((....))))))))))).)))))....))..)))...)))))))))((((.(..((((...))))..))))) ( -34.70) >consensus ACCGACAGCAAUUUGCCAGAGUACGUCUUGCGCUUGCUGCUUGAGUGGAUUUAAAUUUACUCAGCCAGUGUUUUUCGCCCUUCAAUGGCAAUGCAAUGAGCUGGAGAAACUCCUUCCAUU .......(((..(((((((((..((....(((((.(((....((((((((....))))))))))).)))))....))..)))...)))))))))((((.(..((((...))))..))))) (-33.44 = -33.00 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:02 2006