Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,313,503 – 4,313,623 |
Length | 120 |
Max. P | 0.729868 |
Location | 4,313,503 – 4,313,623 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -36.10 |
Consensus MFE | -36.10 |
Energy contribution | -36.10 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 1.00 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4313503 120 + 27905053 CAAAAAUUGCAUUUCCGAGCCCAAAAGAGGAUCAGGGCCAACGCAGCAGUGUACCUGGAGCUGAGUUCGGCUUUUGUUUGCGCAUCAAAUUGCAAUUGCAAUUGCUUUGUGUGCAUACAU ..............((((((((......)).((((..(((((((....))))...)))..))))))))))....(((.(((((((..((((((....)))))).....))))))).))). ( -36.10) >DroSec_CAF1 936 120 + 1 CAAAAAUUGCAUUUCCGAGCCCAAAAGAGGAUCAGGGCCAACGCAGCAGUGUACCUGGAGCUGAGUUCGGCUUUUGUUUGCGCAUCAAAUUGCAAUUGCAAUUGCUUUGUGUGCAUACAU ..............((((((((......)).((((..(((((((....))))...)))..))))))))))....(((.(((((((..((((((....)))))).....))))))).))). ( -36.10) >DroEre_CAF1 952 120 + 1 CAAAAAUUGCAUUUCCGAGCCCAAAAGAGGAUCAGGGCCAACGCAGCAGUGUUCCUGGAGCUGAGUUCGGCUUUUGUUUGCGCAUCAAAUUGCAAUUGCAAUUGCUUUGUGUGCAUACAU ..............((((((((......)).((((..(((((((....))))...)))..))))))))))....(((.(((((((..((((((....)))))).....))))))).))). ( -36.10) >consensus CAAAAAUUGCAUUUCCGAGCCCAAAAGAGGAUCAGGGCCAACGCAGCAGUGUACCUGGAGCUGAGUUCGGCUUUUGUUUGCGCAUCAAAUUGCAAUUGCAAUUGCUUUGUGUGCAUACAU ..............((((((((......)).((((..(((((((....))))...)))..))))))))))....(((.(((((((..((((((....)))))).....))))))).))). (-36.10 = -36.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:01 2006