Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,313,225 – 4,313,423 |
Length | 198 |
Max. P | 0.980923 |
Location | 4,313,225 – 4,313,343 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.75 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -19.33 |
Energy contribution | -19.67 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -1.55 |
Structure conservation index | 0.70 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4313225 118 - 27905053 CUAAUCAUUUCUUUGUAGUAUCCUAAGGUAACUACAAGGGUGCGCUAUUACAGUAUAAAGCCGAGUAGGGAUUACUCUUUCAAGCAUUCAAAUAUUAA--AUUUUGAUGAUUGGGUAUAU (((((((((...((((((((((....))).)))))))(((((((((............))).((((((...))))))......)))))).........--.....)))))))))...... ( -28.00) >DroSec_CAF1 659 117 - 1 CUAAUCAUUUCUUUGUAGUAUCCUAAGGUAACUACAAGGGUGCGCUAUUGCAGUAUAAAGCCGAGUGGCGAUUACCCUUUGAAGCAAUACAUUUUUAG--CUUAUGAUGGUUGAGUAUA- .((((((((...((((((((((....))).)))))))((((((((((((((........))..)))))))..)))))....((((............)--)))..))))))))......- ( -28.20) >DroEre_CAF1 687 105 - 1 CUAAUCAUUUCUUUGUAGUAUCCUCAGGUAACUACAAGGGUGCGCUGUUA-------UAGCCGAUUGUCGAUUGCUCUUUCGAGCAUUUAAAUAUAAAUGGUGUUGAUGGUU-------- ..((((((((((((((((((((....))).)))))))))).(((((((((-------((..((.....))..(((((....)))))......))).)))))))).)))))))-------- ( -26.90) >consensus CUAAUCAUUUCUUUGUAGUAUCCUAAGGUAACUACAAGGGUGCGCUAUUACAGUAUAAAGCCGAGUGGCGAUUACUCUUUCAAGCAUUAAAAUAUUAA__AUUUUGAUGGUUG_GUAUA_ .(((((((((((((((((((((....))).))))))))))((((((............))).(((((.....)))))......)))...................))))))))....... (-19.33 = -19.67 + 0.34)
Location | 4,313,303 – 4,313,423 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -35.03 |
Consensus MFE | -35.25 |
Energy contribution | -35.03 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.57 |
Structure conservation index | 1.01 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4313303 120 - 27905053 AGCUCAUUUCCGCUGCCACAAUUAAAAUGUUAAUCCACCGGAUGCAGGUGGCAGCCAUCGUGGACAAGAACAUGAUUAUGCUAAUCAUUUCUUUGUAGUAUCCUAAGGUAACUACAAGGG (((........((((((((........(((..((((...))))))).)))))))).((((((........))))))...)))........((((((((((((....))).))))))))). ( -35.80) >DroSec_CAF1 736 120 - 1 AGCUCAUUUCCGCUGCCACAAUUAAAAUGUUAAUCCACCGGAUGCAGGUGGCAGCCAUCGUGGACAAGAACAUGAUUAUGCUAAUCAUUUCUUUGUAGUAUCCUAAGGUAACUACAAGGG (((........((((((((........(((..((((...))))))).)))))))).((((((........))))))...)))........((((((((((((....))).))))))))). ( -35.80) >DroEre_CAF1 752 120 - 1 AGCUCAUUUCCGCUGCUACAAUUAAAAUGUUAAUCCACCGGAUGCAGGUGGCAGCCAUCGUGGACAAGAACAUGAUUAUGCUAAUCAUUUCUUUGUAGUAUCCUCAGGUAACUACAAGGG (((........((((((((........(((..((((...))))))).)))))))).((((((........))))))...)))........((((((((((((....))).))))))))). ( -33.50) >consensus AGCUCAUUUCCGCUGCCACAAUUAAAAUGUUAAUCCACCGGAUGCAGGUGGCAGCCAUCGUGGACAAGAACAUGAUUAUGCUAAUCAUUUCUUUGUAGUAUCCUAAGGUAACUACAAGGG (((........((((((((........(((..((((...))))))).)))))))).((((((........))))))...)))........((((((((((((....))).))))))))). (-35.25 = -35.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:00 2006