Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,312,951 – 4,313,071 |
Length | 120 |
Max. P | 0.500000 |
Location | 4,312,951 – 4,313,071 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.72 |
Mean single sequence MFE | -35.95 |
Consensus MFE | -30.91 |
Energy contribution | -30.80 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.85 |
Structure conservation index | 0.86 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4312951 120 - 27905053 UAAGGCGAAUUCUCGCAGCUAAAGCGCAAAAAGCGAAAGCAAAUAUCGCCAUGCGGCUGCGGUGUUCGCUGCGUAAAACUUAAAUAAGACAAGCAUCCCGCUGCCAUCUUUCCCCUGAGU ...(((((((.(.(((((((...(((......((....))......))).....)))))))).))))))).......(((((...((((..(((.....)))....)))).....))))) ( -35.00) >DroSec_CAF1 388 120 - 1 UAAGGCGAAUUCUCGCUGCUAAAGCGCAAAAAGCGAAAGCAAAUAUCGCCAUGCGGCUGCGGCGUUGGCUGCGUAAAACUUAAAUAAGACAACCAUCCCGCUGCCAUUUUUCCCCUGAGU ...(((((.....((((.....))))......((....)).....)))))....(((.((((.(.(((.(((...............).)).))).))))).)))............... ( -35.66) >DroEre_CAF1 416 119 - 1 UAAGGCGAAUUCUCGCAGCUAAAGCGCAAAAAGCGAAAGCAAAUAUCGUCAUGCGGCUGCGGCGGUGGCAGCGUAAAACUUAAAUAAGACAAGCAUCCCGCUGCCAU-UUUCCCCUGAGC ..(((.(((...((((((((...(((......((....))......))).....)))))))).((((((((((..(..(((.........)))..)..)))))))))-)))).))).... ( -37.20) >consensus UAAGGCGAAUUCUCGCAGCUAAAGCGCAAAAAGCGAAAGCAAAUAUCGCCAUGCGGCUGCGGCGUUGGCUGCGUAAAACUUAAAUAAGACAAGCAUCCCGCUGCCAU_UUUCCCCUGAGU ...(((((......((.((....)))).....((....)).....)))))..(((((.(((((....)))))......(((....)))...........)))))................ (-30.91 = -30.80 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:58 2006