Locus 1492

Sequence ID 3R_DroMel_CAF1
Location 4,303,975 – 4,304,095
Length 120
Max. P 0.876665
window2477

overview

Window 7

Location 4,303,975 – 4,304,095
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -28.70
Consensus MFE -28.70
Energy contribution -28.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.58
Structure conservation index 1.00
SVM decision value 0.90
SVM RNA-class probability 0.876665
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4303975 120 + 27905053
UAACUUUUCUAAUUGGCAUUUUUCCGCAAUGAUUGCAGUUGAACACGCUGCGAUAAAAGCUAAUCGAAUUAUGCUUUUGGCAAAUGCCACAACAGCUGCACGAAACCAGCAAAAACUAAC
.............((((((((..((......((((((((.......))))))))((((((((((...)))).)))))))).)))))))).....((((........)))).......... ( -28.70)
>DroSec_CAF1 105150 120 + 1
UAACUUUUCUAAUUGGCAUUUUUCCGCAAUGAUUGCAGUUGAACACGCUGCGAUAAAAGCUAAUCGAAUUAUGCUUUUGGCAAAUGCCACAACAGCUGCACGAAACCAGCAAAAACUAAC
.............((((((((..((......((((((((.......))))))))((((((((((...)))).)))))))).)))))))).....((((........)))).......... ( -28.70)
>DroSim_CAF1 105735 120 + 1
UAACUUUUCUAAUUGGCAUUUUUCCGCAAUGAUUGCAGUUGAACACGCUGCGAUAAAAGCUAAUCGAAUUAUGCUUUUGGCAAAUGCCACAACAGCUGCACGAAACCAGCAAAAACUAAC
.............((((((((..((......((((((((.......))))))))((((((((((...)))).)))))))).)))))))).....((((........)))).......... ( -28.70)
>DroYak_CAF1 108650 120 + 1
UAACUUUUCUAAUUGGCAUUUUUCCGCAAUGAUUGCAGUUGAACACGCUGCGAUAAAAGCUAAUCGAAUUAUGCUUUUGGCAAAUGCCACAACAGCUGCACGAAACCAGCAAAAACUAAC
.............((((((((..((......((((((((.......))))))))((((((((((...)))).)))))))).)))))))).....((((........)))).......... ( -28.70)
>consensus
UAACUUUUCUAAUUGGCAUUUUUCCGCAAUGAUUGCAGUUGAACACGCUGCGAUAAAAGCUAAUCGAAUUAUGCUUUUGGCAAAUGCCACAACAGCUGCACGAAACCAGCAAAAACUAAC
.............((((((((..((......((((((((.......))))))))((((((((((...)))).)))))))).)))))))).....((((........)))).......... (-28.70 = -28.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:54 2006