Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,299,135 – 4,299,233 |
Length | 98 |
Max. P | 0.895576 |
Location | 4,299,135 – 4,299,233 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.41 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -13.70 |
Energy contribution | -15.29 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.27 |
Mean z-score | -2.85 |
Structure conservation index | 0.60 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4299135 98 - 27905053 UUUAACUUGCAUUGCCGC--CUCAAACAUU--GAUGGCAAUCAAAUGCGAGUUGGAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA (((((((((((((...((--((((.....)--)).))).....)))))))))))))......((((((((((((((.......)))))).)))))))).... ( -26.80) >DroVir_CAF1 144931 81 - 1 --------------GGUCUGCUCAAGC-UGGGUGCCGCAAUCAAAUGC------GAGUCAAAUGUCUUAUGAAUUUCUACUCAAAAAUUCAUUAGCCGCAAA --------------(((..((((....-.)))))))(((......)))------........(((((.((((((((........)))))))).))..))).. ( -14.60) >DroSec_CAF1 100337 98 - 1 UUUAACUUGCAUUGCCUC--UACAAACGUU--GAUGGCAAUCAAAUGCGAGUUGAAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA ((((((((((((((((((--.((....)).--)).)))).....))))))))))))......((((((((((((((.......)))))).)))))))).... ( -26.50) >DroSim_CAF1 100950 98 - 1 UUUAACUGGCAUUGCCUC--UACAAACGUU--GAUGGCAAUCAAAUGCGAGUUGGAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA (((((((.((((((((((--.((....)).--)).)))).....)))).)))))))......((((((((((((((.......)))))).)))))))).... ( -24.40) >DroEre_CAF1 103632 95 - 1 UUUAAUUUGCAUUGUCU-----CAAACGUU--GAUGGCAAUCAAAUGCGAGUCGCAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA ....(((((.(((((((-----((.....)--)).)))))))))))(((...))).......((((((((((((((.......)))))).)))))))).... ( -18.50) >DroYak_CAF1 103847 98 - 1 UUCAAUUUGCAUUGCCUC--UUCAAACGUU--GAUGGCAAUCAAAUGCGAGUUGGAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA ((((((((((((((((..--.(((.....)--)).)))).....))))))))))))......((((((((((((((.......)))))).)))))))).... ( -25.40) >consensus UUUAACUUGCAUUGCCUC__UUCAAACGUU__GAUGGCAAUCAAAUGCGAGUUGGAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA ((((((((((((((((...................)))).....))))))))))))......((((((((((((((.......)))))).)))))))).... (-13.70 = -15.29 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:51 2006