Locus 149

Sequence ID 3R_DroMel_CAF1
Location 775,537 – 775,660
Length 123
Max. P 0.973134
window243 window244

overview

Window 3

Location 775,537 – 775,628
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 81.86
Mean single sequence MFE -22.80
Consensus MFE -16.02
Energy contribution -16.47
Covariance contribution 0.45
Combinations/Pair 1.32
Mean z-score -1.48
Structure conservation index 0.70
SVM decision value 0.12
SVM RNA-class probability 0.595094
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 775537 91 + 27905053
-----UUAUUGCCGCUGCUUUUUUAAAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCUUAUUUCUGGCUGCCGGCGCAACUAGCGGCUGCAUC
-----.....(((((((....(((((((......)))))))....)))).....((((......)))))))(((.(.(((.....))).).))).. ( -20.90)
>DroSec_CAF1 66303 91 + 1
-----UUAUUGCCGCUGCUUUUUUAAAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCCUAUUUCUGGCUGCCGGUGCAACUAGCGUCGGCAGU
-----.....(((((((....(((((((......)))))))....)))).....((((......)))))))(((((..((.....))..))))).. ( -25.10)
>DroSim_CAF1 36817 90 + 1
-----UUAUUGCCGCUGCUUU-UUAAAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCCUAUUUCUGGCUGCCGGCGCAACUAGCGUCGGCAGU
-----.....(((((((...(-((((((......)))))))....)))).....((((......)))))))(((((((((.....))))))))).. ( -28.70)
>DroEre_CAF1 31471 90 + 1
-----UUAUUGCCGCUGCUAU-UUAAAUAAGAACAUUGGAUUUGUUAGCUUAUGAGAGUCUUAUUUCUGGCUGCGGGCGUAAAUAGCGGCUGCAGC
-----...((((.((((((((-(((......((((.......))))((((...((((......)))).)))).......))))))))))).)))). ( -26.80)
>DroYak_CAF1 51783 90 + 1
-----UUAUUGCCGCUGCUAU-UUAAAUUAUAACAUUUGAGUUGUUAGCUUAUGAGAGUCUUAUUUCUGGCUGCAGGCGGUACUAUCGGAUGCAGC
-----....(((((((((.((-((((((......))))))))....((((...((((......)))).))))))).)))))).............. ( -20.90)
>DroAna_CAF1 41015 91 + 1
UUUUUUUUUUGCCGCUCCUUU-ACGAAUUAUAACAUUUGAGUUGUUAGCUUAUGAGAGAC----UUCUGACUGCCGCCUAACCUAGGGGCUACUUC
.............((((((..-.(((((......)))))(((((..(((((....))).)----)..)))))............))))))...... ( -14.40)
>consensus
_____UUAUUGCCGCUGCUUU_UUAAAUUAGAACAUUUGAGUUGUUAGCUUAUAAGAGUCUUAUUUCUGGCUGCCGGCGCAACUAGCGGCUGCAGC
..........(((((((.....((((((......)))))).....)))).....((((......)))))))(((((.(((.....))).))))).. (-16.02 = -16.47 +   0.45) 

alignment

Postscript

secondary structure

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dotplot

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Window 4

Location 775,557 – 775,660
Length 103
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.32
Mean single sequence MFE -32.88
Consensus MFE -22.70
Energy contribution -23.73
Covariance contribution 1.03
Combinations/Pair 1.48
Mean z-score -3.64
Structure conservation index 0.69
SVM decision value 1.71
SVM RNA-class probability 0.973134
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 775557 103 + 27905053
AAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCUUAUUUCUGGCUGCCGGCGCAACUAGCGGCUGCAUCCAUA-GAGGACUUCCUAAUUU-UUUAAGUGAAUU
........((((((((...((((.......(((((((.....(((.(((.(.(((.....))).).))).)))..-.))))))).))))...-)))))))).... ( -26.10)
>DroSec_CAF1 66323 103 + 1
AAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCCUAUUUCUGGCUGCCGGUGCAACUAGCGUCGGCAGUCAUA-AAGGACUUCCUAAUUU-UUUAAGUGAAUU
........((((((((...((((.......(((((((..((.(((((((((..((.....))..))))))))).)-)))))))).))))...-)))))))).... ( -35.70)
>DroSim_CAF1 36836 104 + 1
AAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCCUAUUUCUGGCUGCCGGCGCAACUAGCGUCGGCAGUCAUA-GAGGACUUCCUAAUUUUUUUAAGUGAAUU
........((((((((...((((.......(((((((.....(((((((((((((.....)))))))))))))..-.))))))).))))....)))))))).... ( -40.00)
>DroEre_CAF1 31490 104 + 1
AAUAAGAACAUUGGAUUUGUUAGCUUAUGAGAGUCUUAUUUCUGGCUGCGGGCGUAAAUAGCGGCUGCAGCCAUAGAAGGACUUCCUGAUUU-UUAAAGUGAACU
..................(((.((((.((((((((...(((.(((((((((.(((.....))).))))))))).)))(((....))))))))-))))))).))). ( -35.40)
>DroYak_CAF1 51802 103 + 1
AAUUAUAACAUUUGAGUUGUUAGCUUAUGAGAGUCUUAUUUCUGGCUGCAGGCGGUACUAUCGGAUGCAGCCAUA-AAGGACUUGCUGAUUU-CUUAAGUGAACU
........((((((((..((((((......((((((..(((.((((((((..((((...))))..)))))))).)-))))))))))))))..-)))))))).... ( -38.50)
>DroAna_CAF1 41039 99 + 1
AAUUAUAACAUUUGAGUUGUUAGCUUAUGAGAGAC----UUCUGACUGCCGCCUAACCUAGGGGCUACUUCUACA-GUGGAUUACCGCGAUU-CUUGCAUAACUU
.....(((((.......)))))..(((((..(((.----.((.....(((.((((...)))))))..........-((((....)))))).)-))..)))))... ( -21.60)
>consensus
AAUUAGAACAUUUGAGUUGUUAGCUUAUAAGAGUCUUAUUUCUGGCUGCCGGCGCAACUAGCGGCUGCAGCCAUA_AAGGACUUCCUAAUUU_UUUAAGUGAAUU
........((((((((...((((.......(((((((.....(((((((((.(((.....))).)))))))))....))))))).))))....)))))))).... (-22.70 = -23.73 +   1.03) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:35 2006