Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 775,537 – 775,660 |
Length | 123 |
Max. P | 0.973134 |
Location | 775,537 – 775,628 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.86 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -16.02 |
Energy contribution | -16.47 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.32 |
Mean z-score | -1.48 |
Structure conservation index | 0.70 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 775537 91 + 27905053 -----UUAUUGCCGCUGCUUUUUUAAAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCUUAUUUCUGGCUGCCGGCGCAACUAGCGGCUGCAUC -----.....(((((((....(((((((......)))))))....)))).....((((......)))))))(((.(.(((.....))).).))).. ( -20.90) >DroSec_CAF1 66303 91 + 1 -----UUAUUGCCGCUGCUUUUUUAAAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCCUAUUUCUGGCUGCCGGUGCAACUAGCGUCGGCAGU -----.....(((((((....(((((((......)))))))....)))).....((((......)))))))(((((..((.....))..))))).. ( -25.10) >DroSim_CAF1 36817 90 + 1 -----UUAUUGCCGCUGCUUU-UUAAAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCCUAUUUCUGGCUGCCGGCGCAACUAGCGUCGGCAGU -----.....(((((((...(-((((((......)))))))....)))).....((((......)))))))(((((((((.....))))))))).. ( -28.70) >DroEre_CAF1 31471 90 + 1 -----UUAUUGCCGCUGCUAU-UUAAAUAAGAACAUUGGAUUUGUUAGCUUAUGAGAGUCUUAUUUCUGGCUGCGGGCGUAAAUAGCGGCUGCAGC -----...((((.((((((((-(((......((((.......))))((((...((((......)))).)))).......))))))))))).)))). ( -26.80) >DroYak_CAF1 51783 90 + 1 -----UUAUUGCCGCUGCUAU-UUAAAUUAUAACAUUUGAGUUGUUAGCUUAUGAGAGUCUUAUUUCUGGCUGCAGGCGGUACUAUCGGAUGCAGC -----....(((((((((.((-((((((......))))))))....((((...((((......)))).))))))).)))))).............. ( -20.90) >DroAna_CAF1 41015 91 + 1 UUUUUUUUUUGCCGCUCCUUU-ACGAAUUAUAACAUUUGAGUUGUUAGCUUAUGAGAGAC----UUCUGACUGCCGCCUAACCUAGGGGCUACUUC .............((((((..-.(((((......)))))(((((..(((((....))).)----)..)))))............))))))...... ( -14.40) >consensus _____UUAUUGCCGCUGCUUU_UUAAAUUAGAACAUUUGAGUUGUUAGCUUAUAAGAGUCUUAUUUCUGGCUGCCGGCGCAACUAGCGGCUGCAGC ..........(((((((.....((((((......)))))).....)))).....((((......)))))))(((((.(((.....))).))))).. (-16.02 = -16.47 + 0.45)
Location | 775,557 – 775,660 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.32 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -22.70 |
Energy contribution | -23.73 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.48 |
Mean z-score | -3.64 |
Structure conservation index | 0.69 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 775557 103 + 27905053 AAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCUUAUUUCUGGCUGCCGGCGCAACUAGCGGCUGCAUCCAUA-GAGGACUUCCUAAUUU-UUUAAGUGAAUU ........((((((((...((((.......(((((((.....(((.(((.(.(((.....))).).))).)))..-.))))))).))))...-)))))))).... ( -26.10) >DroSec_CAF1 66323 103 + 1 AAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCCUAUUUCUGGCUGCCGGUGCAACUAGCGUCGGCAGUCAUA-AAGGACUUCCUAAUUU-UUUAAGUGAAUU ........((((((((...((((.......(((((((..((.(((((((((..((.....))..))))))))).)-)))))))).))))...-)))))))).... ( -35.70) >DroSim_CAF1 36836 104 + 1 AAUUAGAACAUUUGAGUUUUUAGCUUAUAAGAGUCCUAUUUCUGGCUGCCGGCGCAACUAGCGUCGGCAGUCAUA-GAGGACUUCCUAAUUUUUUUAAGUGAAUU ........((((((((...((((.......(((((((.....(((((((((((((.....)))))))))))))..-.))))))).))))....)))))))).... ( -40.00) >DroEre_CAF1 31490 104 + 1 AAUAAGAACAUUGGAUUUGUUAGCUUAUGAGAGUCUUAUUUCUGGCUGCGGGCGUAAAUAGCGGCUGCAGCCAUAGAAGGACUUCCUGAUUU-UUAAAGUGAACU ..................(((.((((.((((((((...(((.(((((((((.(((.....))).))))))))).)))(((....))))))))-))))))).))). ( -35.40) >DroYak_CAF1 51802 103 + 1 AAUUAUAACAUUUGAGUUGUUAGCUUAUGAGAGUCUUAUUUCUGGCUGCAGGCGGUACUAUCGGAUGCAGCCAUA-AAGGACUUGCUGAUUU-CUUAAGUGAACU ........((((((((..((((((......((((((..(((.((((((((..((((...))))..)))))))).)-))))))))))))))..-)))))))).... ( -38.50) >DroAna_CAF1 41039 99 + 1 AAUUAUAACAUUUGAGUUGUUAGCUUAUGAGAGAC----UUCUGACUGCCGCCUAACCUAGGGGCUACUUCUACA-GUGGAUUACCGCGAUU-CUUGCAUAACUU .....(((((.......)))))..(((((..(((.----.((.....(((.((((...)))))))..........-((((....)))))).)-))..)))))... ( -21.60) >consensus AAUUAGAACAUUUGAGUUGUUAGCUUAUAAGAGUCUUAUUUCUGGCUGCCGGCGCAACUAGCGGCUGCAGCCAUA_AAGGACUUCCUAAUUU_UUUAAGUGAAUU ........((((((((...((((.......(((((((.....(((((((((.(((.....))).)))))))))....))))))).))))....)))))))).... (-22.70 = -23.73 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:35 2006