Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,298,883 – 4,298,978 |
Length | 95 |
Max. P | 0.790644 |
Location | 4,298,883 – 4,298,978 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.05 |
Mean single sequence MFE | -37.86 |
Consensus MFE | -31.24 |
Energy contribution | -31.04 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.55 |
Structure conservation index | 0.83 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4298883 95 - 27905053 AGGAGGAGG-------CCAGCGGCCCAAAGAGGCUUUAAUUGAGCGACUCCGCCCCGCCUUCAAUGAGAUGGAGGUGUGCUGUCCAAAUGGUUUCUUCCGCG .((((((((-------((((((((.....(((((((.....))))..))).....((((((((......)))))))).))))).....)))))))))))... ( -37.00) >DroSec_CAF1 100085 95 - 1 AGGAGGUGG-------CCAGCGGCCCAAAGAGGCUUUAAUUGAGCGACUCCGCCCCGCCUCCAAGGAGUUGGAGGUGUGCUGUCCAAAUGGUUUCUUCCGCG .(((((..(-------((((((((.....(((((((.....))))..))).....(((((((((....))))))))).))))).....))))..)))))... ( -36.90) >DroSim_CAF1 100707 95 - 1 AGGAGGUGG-------CCAGCGGCCCAAAGAGGCUUUAAUUGAGCGACUCCGCCCCGCCUCCAAGGAGAUGGAGGUGUGCUGUCCAAAUGGUUUCUUCCGCG .(((((..(-------((((((((.....(((((((.....))))..)))(((((((.(((....))).))).)))).))))).....))))..)))))... ( -36.40) >DroEre_CAF1 103382 95 - 1 AGGAGGAGG-------CCAGCGGCCCAAAGAAGCUUUAAUUGAGCGACUCCGCCCCGCCUCCAAGAAGAUGGAGGUGUGCUGUCCAAAUGGUUUCUUCCGCG .((((((((-------(((((((.....((..((((.....))))..))))))..((((((((......))))))))...........)))))))))))... ( -40.50) >DroYak_CAF1 103575 102 - 1 AGGAGGCGGCCAGUGGCCAGCGGCCCAAAGAAGCUUUAAUUAAGCGACUCCGCCCCGCCUUCAAGGAGAUGGAGGUGUGCUGUCCAAAUGGUUUCUACCGCG .((.((..((((.(((.(((((((....((..((((.....))))..))..))).((((((((......)))))))).)))).)))..))))..)).))... ( -38.50) >consensus AGGAGGAGG_______CCAGCGGCCCAAAGAGGCUUUAAUUGAGCGACUCCGCCCCGCCUCCAAGGAGAUGGAGGUGUGCUGUCCAAAUGGUUUCUUCCGCG .(((((...........(((((((....((..((((.....))))..))..))).((((((((......)))))))).)))).((....))...)))))... (-31.24 = -31.04 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:50 2006