Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,296,093 – 4,296,183 |
Length | 90 |
Max. P | 0.500000 |
Location | 4,296,093 – 4,296,183 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -19.53 |
Consensus MFE | -14.07 |
Energy contribution | -15.40 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.72 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4296093 90 - 27905053 UGGCAUUAGCCAAUGAGCCCCAUUGGAUACCCCGGAUCCCCCUGAUCCCCUUGGUUUCUGUACCACCAAAACCACCCAAUAGCCCACCGC ((((....)))).((.((...(((((.......(((((.....)))))...((((((.((......)))))))).))))).)).)).... ( -21.20) >DroSec_CAF1 97323 90 - 1 UGGCAUUAGCCAAUGAGCCCCAUUGGAUACCCCGGAUCUCCCGGAUCCCCUUGGUUUCUGUACCACCAAAACCAGCCAACAACCCACCGC ((((.....((((((.....)))))).......(((((.....)))))...((((((.((......))))))))))))............ ( -23.90) >DroSim_CAF1 97927 81 - 1 UGGCCUUAGCCAAUGAGCCCCAUUGGAUACCCCG---------GAUCCCCUUGGUUUCUGUACCACCAAAACCACCCAACAAACCACCGC .((......((((((.....)))))).....))(---------(....)).((((((.((......))))))))................ ( -13.50) >consensus UGGCAUUAGCCAAUGAGCCCCAUUGGAUACCCCGGAUC_CCC_GAUCCCCUUGGUUUCUGUACCACCAAAACCACCCAACAACCCACCGC .((......((((((.....)))))).....))(((((.....)))))...((((((.((......))))))))................ (-14.07 = -15.40 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:48 2006