Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,294,563 – 4,294,654 |
Length | 91 |
Max. P | 0.784924 |
Location | 4,294,563 – 4,294,654 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 90.31 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -26.56 |
Energy contribution | -26.44 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.05 |
Mean z-score | -1.27 |
Structure conservation index | 0.96 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4294563 91 + 27905053 GGAGCGUGUUGCUGCAUAAAUAAGAAUCAGCACGCGGCUGCAGCAGCGGCACAUGAAAAG-GGAGGACAAG--AAGA-AGCGGCAGUCAGCCGUC ...((((((((...(........)...)))))))).(((((....)))))..........-..........--....-.(((((.....))))). ( -27.50) >DroSec_CAF1 95897 91 + 1 GGAGCGUGUUGCAGCAUAAAUAAGAAUCAGCACGCGGCUGCAGCAGCGGCACAUGAAAAG-GGAGGACAAG--AAGA-AGCGGCAGUCAGCCGUC ...((((((((...(........)...)))))))).(((((....)))))..........-..........--....-.(((((.....))))). ( -27.50) >DroSim_CAF1 96516 91 + 1 GGAGCGUGUUGCAGCAUAAAUAAGAAUCAGCACGCGGCUGCAGCAGCGGCACAUGAAAAG-GGAGGACAAG--AAGA-AGCGGCAGUCAGCCGUC ...((((((((...(........)...)))))))).(((((....)))))..........-..........--....-.(((((.....))))). ( -27.50) >DroEre_CAF1 98926 95 + 1 GGAGCGUGUUGCAGCAUAAAUAGGAAUCAGCACGCGGCUGCAGCAGCGGCACAUGAAAAACGGAGAGGGGGGCGAGGAAGCGGCAGCCAGCCGUC ...((((((((...(........)...)))))))).(((((....))))).........((((...((..(.((......)).)..))..)))). ( -30.30) >DroYak_CAF1 99267 92 + 1 GGAGCGUGUUGCAGCAUAAAUAAGAAUCAGCACGCGGCUGCAGCAGCGGCACAUGAAAAACGAAGGAGAAG--GAGG-AGGGGGAGUCGCCCGUC ...((((((((...(........)...)))))))).(((((....)))))..........(....).....--...(-(.(((......))).)) ( -26.20) >consensus GGAGCGUGUUGCAGCAUAAAUAAGAAUCAGCACGCGGCUGCAGCAGCGGCACAUGAAAAG_GGAGGACAAG__AAGA_AGCGGCAGUCAGCCGUC ...((((((((...(........)...)))))))).(((((....))))).............................(((((.....))))). (-26.56 = -26.44 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:47 2006