Locus 1485

Sequence ID 3R_DroMel_CAF1
Location 4,292,244 – 4,292,356
Length 112
Max. P 0.532130
window2469

overview

Window 9

Location 4,292,244 – 4,292,356
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 90.67
Mean single sequence MFE -21.77
Consensus MFE -19.09
Energy contribution -19.65
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.34
Structure conservation index 0.88
SVM decision value -0.00
SVM RNA-class probability 0.532130
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4292244 112 + 27905053
AAAGAAAGAAAGAAACAGGUAAAUUGCGUGGCCAUAGACCAUAAAGCCGCAAACAGAGAAAGGUGUACUAUACACCGAGUUAUAGACAAGGCGGGAAAGAUUGCUUGGAAUA
...............(((((((.....((((.......))))....((((...........((((((...))))))..(((...)))...))))......)))))))..... ( -23.20)
>DroSim_CAF1 93113 103 + 1
------AGAAAGAAACAGGUAAAUUACGUGGCCAUAGACCAUAAAGCCGCAAACAGAGAAAGGUGUACCAUACACCGAGUUAUAGACAAGGCGGGAAAGAUUGCUGGGA---
------.......(((...........(((((..((.....))..)))))...........((((((...))))))..))).....(..(((((......)))))..).--- ( -19.70)
>DroEre_CAF1 96728 101 + 1
--------AAAGAAACAGGUAAAUUACGUGGCCAUAGACCAUAAAGCCGCAAACAGAGAAAGGUGUACUAUGCACCGAGUUAUAGACAAGGCGGGAAAGAUUGGUUGUA---
--------.......((.(((...))).))......(((((.....((((...........(((((.....)))))..(((...)))...)))).......)))))...--- ( -20.20)
>DroYak_CAF1 96894 101 + 1
--------AAAGAAACAGGUAAAUUACGUGGCCAUAGACCAUAAAGCCGCAAACAGAGAAAGGUGUACUACACACCGAGUUAUAGACAAGGCGGCAAAGAUUGGUUGGA---
--------.......((.(((...))).)).(((...((((....(((((...........(((((.....)))))..(((...)))...)))))......))))))).--- ( -24.00)
>consensus
________AAAGAAACAGGUAAAUUACGUGGCCAUAGACCAUAAAGCCGCAAACAGAGAAAGGUGUACUAUACACCGAGUUAUAGACAAGGCGGGAAAGAUUGCUUGGA___
...............(((((((.....((((.......))))....((((...........(((((.....)))))..(((...)))...))))......)))))))..... (-19.09 = -19.65 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:46 2006