Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,286,327 – 4,286,419 |
Length | 92 |
Max. P | 0.565407 |
Location | 4,286,327 – 4,286,419 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -19.18 |
Consensus MFE | -14.20 |
Energy contribution | -14.45 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.24 |
Mean z-score | -1.38 |
Structure conservation index | 0.74 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4286327 92 - 27905053 UCCCC-ACCAACCGCUCCCAGCUGCGGGAGUUUAUGUUGAGAUUUACUUUAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUGUGCGAAAU .....-......(((...(((.(((((((((....((((((......)))))).))))))))).))).......((((....))))))).... ( -22.20) >DroPse_CAF1 96364 91 - 1 CGCCUCCCCUCCUGCUCC--UCUGUGGGAGUUUGUGUUCAGAUUUACUUUAACUACUCCUGCGCCUGCAACUAUGCAAUAAAUUUUGCGAAAU ............(((...--..((..(((((..((....((.....))...)).)))))..))...)))....(((((......))))).... ( -17.30) >DroEre_CAF1 90856 92 - 1 UCCCC-ACCAACCGCUCCCAGCUGCGGGAGUUUAUGUUGAGAUUUACUUUAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUGUGCGAAAU .....-......(((...(((.(((((((((....((((((......)))))).))))))))).))).......((((....))))))).... ( -22.20) >DroWil_CAF1 96754 73 - 1 ---------AACUGC---C------AGGA--CACUGUUGAGAUUUACUUAAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUUAACAAAAU ---------....((---(------((((--.....(((((.....))))).....))))).)).((((....))))................ ( -11.60) >DroYak_CAF1 90102 93 - 1 UCCCCUACCAACCGCUCCCAGCUGCGGGAGUUUAUGUUGAGAUUUACUUUAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUGUGCGAAAU ............(((...(((.(((((((((....((((((......)))))).))))))))).))).......((((....))))))).... ( -22.20) >DroPer_CAF1 96815 91 - 1 CGCCUCCCCUCCUGCUCC--GCUGUGGGAGUUUGUGUUCAGAUUUACUUUAACUACUCCUGCGCCUGCAACUAUGCAAUAAAUUUUGCGAAAU ............(((...--((.(..(((((..((....((.....))...)).)))))..)))..)))....(((((......))))).... ( -19.60) >consensus UCCCC_ACCAACCGCUCCC_GCUGCGGGAGUUUAUGUUGAGAUUUACUUUAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUGUGCGAAAU ............(((........((((((((....((((((.....))).))).))))))))...((((....)))).........))).... (-14.20 = -14.45 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:38 2006