Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,282,998 – 4,283,095 |
Length | 97 |
Max. P | 0.500000 |
Location | 4,282,998 – 4,283,095 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -26.13 |
Consensus MFE | -14.77 |
Energy contribution | -14.85 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.37 |
Mean z-score | -1.86 |
Structure conservation index | 0.56 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4282998 97 + 27905053 GAAAAUCAAUUUUGAAGGGUAUGAGUAUGGUUUC------CUUC-AACCUUGAGUUACCCGUG----AGGAGGAAACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU .......((((..(...(((((((((((((((((------((((-(....))).....((...----.)))))))))..........)))))))))))).)..)))). ( -26.90) >DroSec_CAF1 84520 97 + 1 GAAAACCAAUUUUGAAGGGUAUGAGUAUGGUUUC------CUUC-AACCUUGAGUUACCCGUG----AGGAGGAAACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU .......((((..(...(((((((((((((((((------((((-(....))).....((...----.)))))))))..........)))))))))))).)..)))). ( -26.90) >DroSim_CAF1 84470 97 + 1 GAAAACCAAUUUUGAAGGGUAUGAGUAUGGUUUC------CUUC-AACCUUGAGUUACCCGUG----AGGAGGAGACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU .......((((..(...(((((((((((((((((------((((-(....))).....((...----.)))))))))..........)))))))))))).)..)))). ( -27.00) >DroEre_CAF1 87626 97 + 1 GAAAUCCAAUUUUGAAGGGUAUGGGUAUGGUUUU------CUUC-AACCUUGAGUUGUCCGGG----GGGAGGAAACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU ....((((.........(((((((((((((.(((------((((-..(((.((....)).)))----..)))))))..........))))))))))))).)))).... ( -28.20) >DroYak_CAF1 86771 98 + 1 AAAAUCCAAUUUUGAAGGGUAUGAGUAUGGUUUU------CUUCGAACCUUGCGUUACCCGUG----AGGAGGUAACUUUAAUAUUUCGUAUUCAAGCCAUGGAAUUU ....((((..(((((((((((...(((.(((((.------....))))).)))..)))))...----..((((((.......))))))...))))))...)))).... ( -25.30) >DroPer_CAF1 93534 107 + 1 GAAUGCCUGUUCUAAAGGGUAUCAAAUUGGUAACCCAACUCUUC-UGCUCUGGUUUCCGCUUGCACUCGGGGAAAACUCGACUAUUUCGUAUGCAUGACCUGGCCUCU ....(((.........(((((((.....))).))))........-......((((...((.(((..(((((.....))))).......))).))..)))).))).... ( -22.50) >consensus GAAAACCAAUUUUGAAGGGUAUGAGUAUGGUUUC______CUUC_AACCUUGAGUUACCCGUG____AGGAGGAAACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU .................(((((((((((((((.............))))...................((((....))))........)))))))))))......... (-14.77 = -14.85 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:36 2006