Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 773,642 – 773,790 |
Length | 148 |
Max. P | 0.938475 |
Location | 773,642 – 773,750 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.62 |
Mean single sequence MFE | -31.28 |
Consensus MFE | -29.07 |
Energy contribution | -29.57 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.93 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 773642 108 + 27905053 ------------UAUUUACGAAUGUCGGGACGGCGCGAACGCCAUUCCCGGCUAACAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUAC ------------(((((.((...(((((((.((((....))))..)))))))...............((.(((.((((((.......)))))))))..(((.....))).))))))))). ( -29.90) >DroSec_CAF1 64430 108 + 1 ------------UAUUUACGAAUGUCGGGACGGCGCGAACGCCAUUCCCGGCUAACAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGC ------------...........(((((((.((((....))))..)))))))...............((((((.((((((.......))))))))((.(((.....))).))....)))) ( -31.80) >DroSim_CAF1 34942 108 + 1 ------------UAUUUACGAAUGUCGGGACGGCGCGAACGCCAUUCCCGGCUAACAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGC ------------...........(((((((.((((....))))..)))))))...............((((((.((((((.......))))))))((.(((.....))).))....)))) ( -31.80) >DroEre_CAF1 29643 108 + 1 ------------CAUUUUCAAAUGUCGGGACGGCGCGAACGCCAUUCCCGGCUACCAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGC ------------...........(((((((.((((....))))..)))))))...............((((((.((((((.......))))))))((.(((.....))).))....)))) ( -31.80) >DroYak_CAF1 39050 108 + 1 ------------UAUUUACCAUUGUCGGGACGGCGCGAACGCCAUUCCCGGCUACCAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGC ------------....((((...(((((((.((((....))))..)))))))...............((.(((.((((((.......)))))))))..(((.....))).))...)))). ( -32.30) >DroAna_CAF1 36548 119 + 1 AGAUUUUAAAUGUA-UUUCUUAUGUCGGGACGGCGCGAACGCCAUUCCCGGCUACCAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACCCAACCGAGGUGC ..........((((-........(((((((.((((....))))..)))))))..........)))).((((((.((((((.......)))))))).....(((.......)))...)))) ( -30.07) >consensus ____________UAUUUACGAAUGUCGGGACGGCGCGAACGCCAUUCCCGGCUAACAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGC .......................(((((((.((((....))))..)))))))...............((((((.((((((.......))))))))((.(((.....))).))....)))) (-29.07 = -29.57 + 0.50)
Location | 773,642 – 773,750 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.62 |
Mean single sequence MFE | -33.70 |
Consensus MFE | -31.97 |
Energy contribution | -31.55 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.10 |
Mean z-score | -1.15 |
Structure conservation index | 0.95 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 773642 108 - 27905053 GUACCUCGGCUGAGUUGACCUCUGCGAUUAUUCCUAAUGUGAAUAACUCGUGCGUGUAAUUUUUGUUAGCCGGGAAUGGCGUUCGCGCCGUCCCGACAUUCGUAAAUA------------ .(((...((((((((((..(.(.(((((((((((....).)))))).))))).)..)))).....))))))((((.(((((....))))))))).......)))....------------ ( -31.60) >DroSec_CAF1 64430 108 - 1 GCACCUCGGCUGAGUUGACCUCUGCGAUUAUUCCUAAUGUGAAUAACUCGUGCGUGUAAUUUUUGUUAGCCGGGAAUGGCGUUCGCGCCGUCCCGACAUUCGUAAAUA------------ ((((....((.(((.....))).))(((((((((....).)))))).))))))...............(.(((((.(((((....)))))))))).)...........------------ ( -32.30) >DroSim_CAF1 34942 108 - 1 GCACCUCGGCUGAGUUGACCUCUGCGAUUAUUCCUAAUGUGAAUAACUCGUGCGUGUAAUUUUUGUUAGCCGGGAAUGGCGUUCGCGCCGUCCCGACAUUCGUAAAUA------------ ((((....((.(((.....))).))(((((((((....).)))))).))))))...............(.(((((.(((((....)))))))))).)...........------------ ( -32.30) >DroEre_CAF1 29643 108 - 1 GCACCUCGGCUGAGUUGACCUCUGCGAUUAUUCCUAAUGUGAAUAACUCGUGCGUGUAAUUUUUGGUAGCCGGGAAUGGCGUUCGCGCCGUCCCGACAUUUGAAAAUG------------ ((((....((.(((.....))).))(((((((((....).)))))).)))))).....(((((..(..(.(((((.(((((....)))))))))).)..)..))))).------------ ( -35.70) >DroYak_CAF1 39050 108 - 1 GCACCUCGGCUGAGUUGACCUCUGCGAUUAUUCCUAAUGUGAAUAACUCGUGCGUGUAAUUUUUGGUAGCCGGGAAUGGCGUUCGCGCCGUCCCGACAAUGGUAAAUA------------ ..(((..(((((((.....))).(((((((((((....).)))))).))))................))))((((.(((((....)))))))))......))).....------------ ( -33.50) >DroAna_CAF1 36548 119 - 1 GCACCUCGGUUGGGUUGACCUCUGCGAUUAUUCCUAAUGUGAAUAACUCGUGCGUGUAAUUUUUGGUAGCCGGGAAUGGCGUUCGCGCCGUCCCGACAUAAGAAA-UACAUUUAAAAUCU ((((...((((.....)))).....(((((((((....).)))))).))))))(((((.((((((...(.(((((.(((((....)))))))))).).)))))).-)))))......... ( -36.80) >consensus GCACCUCGGCUGAGUUGACCUCUGCGAUUAUUCCUAAUGUGAAUAACUCGUGCGUGUAAUUUUUGGUAGCCGGGAAUGGCGUUCGCGCCGUCCCGACAUUCGUAAAUA____________ ((((....((.(((.....))).))(((((((((....).)))))).))))))...............(.(((((.(((((....)))))))))).)....................... (-31.97 = -31.55 + -0.42)
Location | 773,670 – 773,790 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.56 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -30.10 |
Energy contribution | -30.77 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -0.93 |
Structure conservation index | 0.93 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 773670 120 + 27905053 GCCAUUCCCGGCUAACAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUACAAUGGCCAAGCCUCACUCCGGAGGAACCGCCUUCGUGAUC (((((((((((((.................(((.((((((.......)))))))))..(((.....)))))))).))...))))))..........((((((((.....)))))).)).. ( -34.50) >DroSec_CAF1 64458 120 + 1 GCCAUUCCCGGCUAACAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGCAAUGACCAAGCCUCACUCCGGAGGAACCGCCUUCGUGAUC .........((((.................(((.((((((.......)))))))))..(((.....)))))))(((((...........)))))..((((((((.....)))))).)).. ( -29.90) >DroSim_CAF1 34970 120 + 1 GCCAUUCCCGGCUAACAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGCAAUGGCCAAGCCUCACUCCGGAGGAACCGCCUUCGUGAUC (((((((((((((.................(((.((((((.......)))))))))..(((.....)))))))).))...))))))..........((((((((.....)))))).)).. ( -34.50) >DroEre_CAF1 29671 120 + 1 GCCAUUCCCGGCUACCAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGCAAUGGCCAAGCCUCACUCCGGAGGAACCGCCUUCAUGAUC (((((((((((((.................(((.((((((.......)))))))))..(((.....)))))))).))...)))))).............(((((.....)))))...... ( -32.00) >DroYak_CAF1 39078 120 + 1 GCCAUUCCCGGCUACCAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGCAAUGGCCAAGCCUCACUCCGGAGGAACCGCCUUCGUGAUC (((((((((((((.................(((.((((((.......)))))))))..(((.....)))))))).))...))))))..........((((((((.....)))))).)).. ( -34.50) >DroAna_CAF1 36587 120 + 1 GCCAUUCCCGGCUACCAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACCCAACCGAGGUGCAAUGGCCAGGUCUCACUCCGGAGGAACCGCCUUCGUGAUC (((......)))................((((((((((((.......))))))).((...(((((((((....).)))....))))).((((((......)))..)))))..)))))... ( -27.80) >consensus GCCAUUCCCGGCUAACAAAAAUUACACGCACGAGUUAUUCACAUUAGGAAUAAUCGCAGAGGUCAACUCAGCCGAGGUGCAAUGGCCAAGCCUCACUCCGGAGGAACCGCCUUCGUGAUC (((((((((((((.................(((.((((((.......)))))))))..(((.....)))))))).))...))))))..........((((((((.....)))))).)).. (-30.10 = -30.77 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:31 2006