Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,277,318 – 4,277,429 |
Length | 111 |
Max. P | 0.758959 |
Location | 4,277,318 – 4,277,429 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.93 |
Mean single sequence MFE | -36.48 |
Consensus MFE | -27.85 |
Energy contribution | -27.61 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.17 |
Mean z-score | -1.81 |
Structure conservation index | 0.76 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.758959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4277318 111 - 27905053 AUCAACCUGUUUUGAAGCGGGUAGUCAAAAUAUUGAUGCCAUUUCGGCGGGCAUCCCCCUC------CCCACAGCCAUCGCUU--AUUCAGGACCUAUGGAGGCGGAACCCCCGUAUCC .....((((.....(((((((((.((((....)))))))).....((((((..........------)))...)))..)))))--...))))......(((.((((.....)))).))) ( -32.80) >DroSec_CAF1 78845 113 - 1 AUCAACCUGUUUUGAAGCGGGUAGUCAAAAUAUUGAUGCCAUUUCGGCGGGCAUCCCCCUC------UCCACACCCGUCGCCUAUAUUCAGGACCUAUGGAGGCGGAACCCCCGCAUCC .....((((..(.(..((((((.(((((....)))))(((.....)))(((.....)))..------.....))))))..)....)..))))......(((.((((.....)))).))) ( -33.80) >DroSim_CAF1 78793 113 - 1 AUCAACCUGUUUUGAAGCGGGUAGUCAAAAUAUUGAUGCCAUUUCGGCGGGCAUCCCCCUC------UCCACACCCGUCGCCUAUAUUCAGGACCUAUGGAGGCGGAACCCCCGCAUCC .....((((..(.(..((((((.(((((....)))))(((.....)))(((.....)))..------.....))))))..)....)..))))......(((.((((.....)))).))) ( -33.80) >DroEre_CAF1 81984 104 - 1 AUCAACCUGUUUUGAAGCGGGUAGUCAAAAUAUCGAUGCCAUUUCGGCGGGCAUCC-------------CCCGCCCCUUGCCC--AUUCAGGACCUAUGGAGGCGGAACCCCCGUAUCC ........((((((((..((((((((........)))........((((((.....-------------))))))...)))))--.))))))))....(((.((((.....)))).))) ( -35.60) >DroYak_CAF1 81019 116 - 1 AUCAACCUGUUUUGAAGCGGGUAGUCAAAAUAUUGAUGGCAUUUCGGAGGGCAUACCCGCCGCUGCCGCCCCGCCCUUUGCCC--AUUCAGGACUUA-GGAGGCGGAACCCCCGUCUCC ........((((((((..((((((((((....)))))((((...(((.(((....))).))).))))...........)))))--.))))))))...-((((((((.....)))))))) ( -46.40) >consensus AUCAACCUGUUUUGAAGCGGGUAGUCAAAAUAUUGAUGCCAUUUCGGCGGGCAUCCCCCUC______UCCACACCCGUCGCCU__AUUCAGGACCUAUGGAGGCGGAACCCCCGUAUCC ........((((((((..((((.(((((....)))))........((((((......................))))))))))...))))))))....(((.((((.....)))).))) (-27.85 = -27.61 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:33 2006