Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,261,637 – 4,261,744 |
Length | 107 |
Max. P | 0.595135 |
Location | 4,261,637 – 4,261,744 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.31 |
Mean single sequence MFE | -40.52 |
Consensus MFE | -26.39 |
Energy contribution | -27.07 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.09 |
Mean z-score | -1.86 |
Structure conservation index | 0.65 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4261637 107 + 27905053 GUGCCGUUCGGGAUUAAAGUGUCCAAGUCGGAUUGCCGAGCACCACUGGG----CGGUUCAGUUGGUUGG---------AUGGUUAAGUUGGUUUGGCUGCUUUCGGUUGGCAUUCUGUG ((((((..((..(.......((((.....)))).(((((((.(.(((..(----(.((((((....))))---------)).))..))).))))))))...)..))..))))))...... ( -36.30) >DroSec_CAF1 63381 108 + 1 GUGCCGUUCGGGAUUAAAGUGUCCAAGUCGGAUGGCCGAGCACCACUGGG----CGGUUCAGUUG--------GUUGGGAUGGUUAAGUUGGUUUGGCUGCUUUCGGGUGGCAUUCUCUG ((((((..((..(.......((((.....))))((((((((.(.(((..(----(.((((.....--------....)))).))..))).)))))))))..)..))..))))))...... ( -38.90) >DroSim_CAF1 63230 116 + 1 GUGCCGUUCGGGAUUAAAGUGUCCAAGUCGGAUGGCCGAGCACCACUGGG----CGGUUCAGUUGGCUGGAUGGUUGGCAUGGUUAAGUUGGUUUGGCUGCUUUCGGGUAGCAUUCUCUG (.((((((((((((......))))....)))))))))..(((((...(((----((((..((..((((.(((.((....)).))).))))..))..)))))))...))).))........ ( -38.20) >DroEre_CAF1 66414 103 + 1 GUGCCGUUCGGGAUUAAAGUGUCCAAGUCGGAUGGCCGAGCACCGCUGGGCGGGCGGUUCAG-----------------AUGGUUAAGUUGGCUUGGCUGGCUUCGGGUGGCAUUCAAUG ((((((..((((((......))))(((((((..((((((..((((((((((.....))))))-----------------.))))....))))))...)))))))))..))))))...... ( -44.30) >DroYak_CAF1 65289 99 + 1 GUGCCGCUCGGGAUUAAAGUGUCCAAGUCGGAUGGCCGAGCACCAAUGGG----CGGUUCAG-----------------AUGGUUAAGUCGGCUUGGAUGGUUUCGGGUGGCAUUCAAUG ((((((((((..(((.....(((((((((((((.(((.(.......).))----).)))).(-----------------((......)))))))))))))))..))))))))))...... ( -44.90) >consensus GUGCCGUUCGGGAUUAAAGUGUCCAAGUCGGAUGGCCGAGCACCACUGGG____CGGUUCAGUUG______________AUGGUUAAGUUGGUUUGGCUGCUUUCGGGUGGCAUUCUAUG (((((((((((((.......((((.....))))(((((((((((((((((.......)))))..................)))).......))))))))..)))))))))))))...... (-26.39 = -27.07 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:29 2006