| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,259,754 – 4,259,856 |
| Length | 102 |
| Max. P | 0.813403 |
| Location | 4,259,754 – 4,259,856 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.72 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -18.53 |
| Energy contribution | -18.87 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4259754 102 - 27905053 AAACUGUAUUGACAAAAAGUUCUGCAAGGGCUUUUAAGUGAAAAGAAAGCUAAUAUCGUAAGUGAAAGUCACAUGUAUGGUGACACUUUCGUUUGUAGCAAG ...((.((((....((((((((.....)))))))).))))...))...((((....((.((((....(((((.......))))))))).))....))))... ( -20.90) >DroEre_CAF1 64531 102 - 1 AAACUGGCUUAACAUAAUGUGUUGCAAGGGCUUUUAAAUGGGCAGACAGCUAAUAUCGUAAGUGAAAGUCACAUGUAUGGUGACACUUUCAUUUGUAACAGC ....(((((((((((...)))))).....((((......))))....)))))...(..((((((((((((((.......)))))..)))))))))..).... ( -20.70) >DroYak_CAF1 63149 89 - 1 AAACU-------------GUGUUGCAAGUGCUUUUAAAUAAGAAGAAAGCUAAUAUCGUAAGUGAAAGUCACAUGUUUGGUGACACUUUCAUUUGUAACAAG .....-------------.((((((((((((((((.........)))))).............(((((((((.......)))))..)))))))))))))).. ( -21.00) >consensus AAACUG__UU_ACA_AA_GUGUUGCAAGGGCUUUUAAAUGAGAAGAAAGCUAAUAUCGUAAGUGAAAGUCACAUGUAUGGUGACACUUUCAUUUGUAACAAG ...................((((((((((((((((.........)))))))...........((((((((((.......)))))..)))))))))))))).. (-18.53 = -18.87 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:28 2006