Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,258,754 – 4,258,848 |
Length | 94 |
Max. P | 0.934054 |
Location | 4,258,754 – 4,258,848 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 92.55 |
Mean single sequence MFE | -32.52 |
Consensus MFE | -27.38 |
Energy contribution | -28.86 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.72 |
Structure conservation index | 0.84 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.934054 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4258754 94 - 27905053 CGCCAGUCGCACUCCCUGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAACGGAUGGGCAGGGGGCUGAAGUUGUUU ...((((..(((((((((......(((((((.....))..)))))(((((((((((....))....)))))))))))))))).))..))))... ( -32.50) >DroSec_CAF1 60553 94 - 1 CGCCAGUCGCACUCCCUGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAACGGAUCUGCAGGGGGCUGAAGUUGGUU .((((((..(((((((((...(.((((.......((((....(((....))).))))..((.....)))))).).))))))).))..)))))). ( -29.60) >DroSim_CAF1 60353 94 - 1 CGCCAGUCGCACUCCGUGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAACGGAUGGGCAGGGGGCUGGAGUUGGUU .(((((((.((((((.((......(((((((.....))..)))))(((((((((((....))....))))))))))).)))).)))).))))). ( -34.00) >DroEre_CAF1 63526 94 - 1 CGCCAGUCGCACUCCCAGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAUACGGAUGGGCAGGGAGCUCGGUUUGGUU .((((..((..(((((........(((((((.....))..)))))(((((((((((....))....)))))))))..)))))..))..).))). ( -34.80) >DroYak_CAF1 62142 94 - 1 CGCCAGUCGCAUUCCCUGCAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAGCGUAUGGGCAGGGGUCUCGGGUUGGUU .((((..(....(((((((..((((.((((...((((.....(((....)))....))))...)))).))))..))))))).....)..)))). ( -31.70) >consensus CGCCAGUCGCACUCCCUGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAACGGAUGGGCAGGGGGCUGGAGUUGGUU .(((((...(((((((((......(((((((.....))..)))))(((((((((((....))....)))))))))))))))).))...))))). (-27.38 = -28.86 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:27 2006